Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm28958-201ENSMUST00000185864 703 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 1700031M16Rik-205ENSMUST00000189907 969 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm44169-201ENSMUST00000205133 359 ntTSL 2 BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm44226-201ENSMUST00000205203 1195 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm17908-201ENSMUST00000205552 1256 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Gm44566-201ENSMUST00000207638 304 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Gm44809-201ENSMUST00000208305 993 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Gm34066-201ENSMUST00000210156 825 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm45693-201ENSMUST00000211391 1157 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 AC154219.1-201ENSMUST00000220764 1262 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm26575-201ENSMUST00000181714 2232 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Dyrk1a-201ENSMUST00000023614 5754 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Cntn5-204ENSMUST00000162484 3606 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Nkiras1-202ENSMUST00000132374 4598 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Ccdc150-201ENSMUST00000027128 3807 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Asph-209ENSMUST00000108335 2514 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Rps15a-204ENSMUST00000131374 5179 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm45889-202ENSMUST00000211255 2358 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Stambpl1-202ENSMUST00000119603 1664 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm8177-201ENSMUST00000181591 1336 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Trim66-203ENSMUST00000106741 4417 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Mat2a-206ENSMUST00000206692 1400 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Arhgap17-201ENSMUST00000098060 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Ccdc77-201ENSMUST00000032283 2610 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Chid1-207ENSMUST00000153191 4182 ntAPPRIS ALT1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 CT030159.2-201ENSMUST00000221233 1742 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm25346-201ENSMUST00000104509 128 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Gm15209-201ENSMUST00000117703 400 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Gtsf1-205ENSMUST00000141364 700 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm14376-201ENSMUST00000145297 297 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm27601-201ENSMUST00000184794 127 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Olfr1025-ps1-201ENSMUST00000188749 921 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 AC132587.1-201ENSMUST00000220562 166 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Col18a1P39061 Gm18248-201ENSMUST00000191164 1846 ntBASIC9.63□□□□□ -0.87
Col18a1P39061 Clasp1-221ENSMUST00000191823 3916 ntTSL 5 BASIC9.63□□□□□ -0.87
Col18a1P39061 Tmem43-201ENSMUST00000032183 2903 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Cacna1c-202ENSMUST00000078320 8062 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Gm42047-202ENSMUST00000212899 4988 ntTSL 2 BASIC9.62□□□□□ -0.87
Col18a1P39061 L1cam-203ENSMUST00000114430 5126 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Col18a1P39061 Mapk10-205ENSMUST00000128869 2518 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Pfkfb2-203ENSMUST00000169659 2849 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Rin3-204ENSMUST00000133820 3755 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 G3bp1-201ENSMUST00000018727 6703 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Gm4922-202ENSMUST00000216654 2357 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Sfi1-210ENSMUST00000140846 3604 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Col18a1P39061 Zfp2-201ENSMUST00000109128 2782 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Ehmt1-204ENSMUST00000114418 4902 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Col18a1P39061 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Igkv4-91-201ENSMUST00000103333 358 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Col18a1P39061 Igkv4-74-201ENSMUST00000103344 394 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Col18a1P39061 Gm15300-201ENSMUST00000122324 279 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Gm23426-201ENSMUST00000122483 318 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 1700091H14Rik-201ENSMUST00000167772 590 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Anapc13-202ENSMUST00000186693 595 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
Col18a1P39061 Gm6693-201ENSMUST00000189583 813 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Gm37148-201ENSMUST00000195097 716 ntTSL 5 BASIC9.62□□□□□ -0.87
Col18a1P39061 Igkv4-73-201ENSMUST00000199760 358 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Gm7554-201ENSMUST00000202282 574 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Gm44386-201ENSMUST00000204288 429 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Gm2840-201ENSMUST00000048361 411 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Sdad1-203ENSMUST00000201143 2156 ntAPPRIS ALT1 TSL 5 BASIC9.62□□□□□ -0.87
Col18a1P39061 AC159379.2-201ENSMUST00000220244 2482 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Gm42572-201ENSMUST00000202292 3378 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Tpd52l2-204ENSMUST00000108800 3475 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Col18a1P39061 Umodl1-203ENSMUST00000114555 5041 ntAPPRIS P2 TSL 5 BASIC9.62□□□□□ -0.87
Col18a1P39061 Gm44194-201ENSMUST00000204222 3229 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 AC122346.2-201ENSMUST00000224326 2931 ntBASIC9.62□□□□□ -0.87
Col18a1P39061 Nod2-202ENSMUST00000109634 4666 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Tbc1d14-215ENSMUST00000146430 4582 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Kctd7-201ENSMUST00000040616 4291 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Sept2-213ENSMUST00000168776 3267 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
Col18a1P39061 Gpr50-201ENSMUST00000070449 3069 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Gm12959-201ENSMUST00000119396 403 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 Gm12844-201ENSMUST00000119463 582 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 Rps29-ps-201ENSMUST00000122083 172 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 Gm12923-201ENSMUST00000127060 667 ntTSL 5 BASIC9.61□□□□□ -0.87
Col18a1P39061 Rpl35a-ps5-201ENSMUST00000137013 333 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 Gm13291-201ENSMUST00000143527 655 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Gm7008-203ENSMUST00000171356 476 ntTSL 2 BASIC9.61□□□□□ -0.87
Col18a1P39061 Gm7952-201ENSMUST00000180540 984 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 1700020G17Rik-203ENSMUST00000191286 723 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Vmn2r-ps24-201ENSMUST00000199364 858 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 1700028E10Rik-204ENSMUST00000201853 767 ntTSL 5 BASIC9.61□□□□□ -0.87
Col18a1P39061 Gm44565-201ENSMUST00000208194 269 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 Lncbate1-201ENSMUST00000211953 812 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 AC154558.1-201ENSMUST00000222278 415 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 CT009515.3-201ENSMUST00000226509 671 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 AC137902.1-201ENSMUST00000228184 102 ntBASIC9.61□□□□□ -0.87
Col18a1P39061 Myo1f-201ENSMUST00000087605 3819 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Usp14-202ENSMUST00000116669 2019 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Serpina3f-203ENSMUST00000167049 2042 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Synj2-208ENSMUST00000115789 5130 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Clcn7-201ENSMUST00000040729 4071 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Col18a1P39061 Rgs4-202ENSMUST00000111357 2575 ntTSL 5 BASIC9.61□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms