Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm29230-201ENSMUST00000189687 412 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm43471-201ENSMUST00000197550 467 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 2010309G21Rik-201ENSMUST00000198927 458 ntTSL 3 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm44418-201ENSMUST00000204219 705 ntTSL 3 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 1700040L08Rik-201ENSMUST00000205011 541 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm44833-201ENSMUST00000208368 331 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm34533-201ENSMUST00000209249 552 ntTSL 5 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 AC164550.1-201ENSMUST00000217821 1066 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm46311-201ENSMUST00000217971 203 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Fgf10-201ENSMUST00000022246 4114 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 4930477G07Rik-202ENSMUST00000223195 947 ntTSL 5 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 AC133598.2-201ENSMUST00000224302 624 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 AC154649.2-201ENSMUST00000228189 808 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 AC107452.2-201ENSMUST00000228415 363 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Trpm7-201ENSMUST00000028843 6985 ntAPPRIS ALT1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Med21-201ENSMUST00000032429 814 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Sec24a-201ENSMUST00000038210 3800 ntAPPRIS ALT2 TSL 2 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Prss58-201ENSMUST00000063523 979 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm26264-201ENSMUST00000083278 159 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Mir135b-201ENSMUST00000083501 97 ntBASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Il22-201ENSMUST00000096691 1110 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm35439-201ENSMUST00000200051 4809 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Hmg20a-201ENSMUST00000034879 3778 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 AC164623.1-201ENSMUST00000217947 2709 ntTSL 5 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Slc37a3-201ENSMUST00000090243 4030 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Cpvl-203ENSMUST00000204674 1511 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Clcn7-204ENSMUST00000160961 3983 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Skiv2l2-201ENSMUST00000022281 3689 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Pglyrp4-203ENSMUST00000169698 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Maml2-201ENSMUST00000034401 2098 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Gm5087-201ENSMUST00000060526 1921 ntTSL 2 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Kcnj15-205ENSMUST00000113858 5309 ntTSL 5 BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 4933430I17Rik-201ENSMUST00000062145 1783 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Smc1aQ9CU62 Agtpbp1-201ENSMUST00000022040 8174 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 AC153143.1-201ENSMUST00000222966 1340 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Zbtb6-201ENSMUST00000053098 4535 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm3591-201ENSMUST00000164408 1745 ntAPPRIS P5 TSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Usp40-201ENSMUST00000040783 5049 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 AC159195.2-201ENSMUST00000223670 3757 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gen1-201ENSMUST00000166117 5268 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm16427-201ENSMUST00000179091 1449 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Ppp3cc-203ENSMUST00000228911 1836 ntAPPRIS ALT2 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm43314-201ENSMUST00000196744 2231 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Mpzl3-203ENSMUST00000114664 3424 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Rnf170-203ENSMUST00000110575 966 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm13463-201ENSMUST00000119020 233 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm15763-201ENSMUST00000120136 403 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm15842-201ENSMUST00000120513 618 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm12870-201ENSMUST00000121383 1016 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Tecr-202ENSMUST00000163837 1272 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm21430-201ENSMUST00000182998 998 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm37469-201ENSMUST00000193728 890 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm36932-201ENSMUST00000195226 929 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm43560-201ENSMUST00000198100 773 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm44712-201ENSMUST00000206250 1076 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm44508-201ENSMUST00000206943 1157 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm45299-201ENSMUST00000210199 420 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 AC139209.2-201ENSMUST00000227680 1208 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 AC161537.1-202ENSMUST00000228450 868 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Cldn10-202ENSMUST00000071546 1031 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Olfr961-201ENSMUST00000076548 949 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Tnik-214ENSMUST00000162485 3918 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Dnah17-204ENSMUST00000132685 13612 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Pecam1-201ENSMUST00000068021 2977 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm37090-201ENSMUST00000195694 4105 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Fancd2os-201ENSMUST00000035870 1358 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Nsd2-203ENSMUST00000075812 7142 ntAPPRIS P4 TSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm20706-201ENSMUST00000175985 2023 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm36380-201ENSMUST00000210339 4379 ntTSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Flrt3-202ENSMUST00000110057 3977 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 AC153512.1-201ENSMUST00000218961 1603 ntTSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Vmn1r176-202ENSMUST00000226319 2930 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Olfr150-202ENSMUST00000217257 1867 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Gm42630-201ENSMUST00000195908 3448 ntBASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Itih5-201ENSMUST00000026886 7900 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Trim40-201ENSMUST00000087158 2117 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Klb-201ENSMUST00000031096 3540 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Elavl4-207ENSMUST00000106603 3761 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Psd3-203ENSMUST00000093468 1739 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
Smc1aQ9CU62 Olfr1183-202ENSMUST00000213115 8258 ntTSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Actl11-201ENSMUST00000085073 3993 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Lama2-201ENSMUST00000092639 9614 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Rapgef5-201ENSMUST00000109691 6746 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Vwa3a-201ENSMUST00000033180 4575 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Nxpe4-201ENSMUST00000093853 3173 ntAPPRIS P2 TSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Gm37161-201ENSMUST00000191994 2697 ntBASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Sorbs2-222ENSMUST00000141039 1699 ntTSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Usp37-201ENSMUST00000044260 7111 ntTSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Cpne4-203ENSMUST00000098443 1421 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Ttc9c-202ENSMUST00000096751 3509 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Trip12-206ENSMUST00000186465 9590 ntAPPRIS P2 TSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Gm45753-201ENSMUST00000116473 2753 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Olfr961-202ENSMUST00000219295 3374 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Gm43019-201ENSMUST00000196948 2863 ntBASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Plch1-210ENSMUST00000162269 6539 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 n-R5s1-201ENSMUST00000101925 119 ntBASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Olfr1019-201ENSMUST00000102634 933 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Trav9-2-201ENSMUST00000103654 563 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Eqtn-202ENSMUST00000107097 1164 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
Smc1aQ9CU62 Amelx-203ENSMUST00000112119 841 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms