Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Rc3h1-202ENSMUST00000161609 11006 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
Traf1P39428 AC153955.2-201ENSMUST00000216739 4129 ntTSL 1 (best) BASIC8.78□□□□□ -1
Traf1P39428 Tbc1d5-201ENSMUST00000024717 5435 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
Traf1P39428 Phf3-201ENSMUST00000088310 7561 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Traf1P39428 Adgrl3-205ENSMUST00000117985 4974 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -1
Traf1P39428 Ccdc83-202ENSMUST00000107220 1408 ntAPPRIS ALT2 TSL 2 BASIC8.78□□□□□ -1
Traf1P39428 Itgae-202ENSMUST00000102537 3825 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
Traf1P39428 Gm34653-201ENSMUST00000201786 1658 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
Traf1P39428 Gm43537-201ENSMUST00000199064 3110 ntBASIC8.78□□□□□ -1
Traf1P39428 Olfr449-204ENSMUST00000214687 1921 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
Traf1P39428 Cts7-203ENSMUST00000224986 1349 ntAPPRIS P1 BASIC8.78□□□□□ -1
Traf1P39428 Gm2065-201ENSMUST00000194697 2757 ntBASIC8.78□□□□□ -1
Traf1P39428 Gm11639-201ENSMUST00000148007 3613 ntTSL 5 BASIC8.78□□□□□ -1
Traf1P39428 Aadat-202ENSMUST00000209338 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
Traf1P39428 Gm9866-206ENSMUST00000222838 1580 ntTSL 5 BASIC8.78□□□□□ -1
Traf1P39428 Slc17a6-201ENSMUST00000032710 4137 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
Traf1P39428 Olfr97-206ENSMUST00000216225 1847 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1
Traf1P39428 Plekhm3-201ENSMUST00000097713 8562 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1
Traf1P39428 Gm31408-201ENSMUST00000216695 1455 ntTSL 5 BASIC8.77□□□□□ -1
Traf1P39428 Vmn2r12-201ENSMUST00000095922 2496 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Cd247-209ENSMUST00000187313 2957 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Usp50-201ENSMUST00000028842 1361 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Anks1b-201ENSMUST00000099364 1383 ntTSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Gm13102-203ENSMUST00000105761 2281 ntAPPRIS P2 TSL 2 BASIC8.77□□□□□ -1.01
Traf1P39428 Pafah2-202ENSMUST00000105870 3180 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Mkks-201ENSMUST00000028730 2935 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Sh3d19-203ENSMUST00000182666 6886 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Igkv12-44-201ENSMUST00000103367 401 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
Traf1P39428 Gm25546-201ENSMUST00000103977 132 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Eqtn-202ENSMUST00000107097 1164 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Gm13463-201ENSMUST00000119020 233 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Gm15481-201ENSMUST00000120264 539 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Gm12402-201ENSMUST00000120536 334 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Ccdc142os-201ENSMUST00000125657 891 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Gimap6-203ENSMUST00000126422 425 ntTSL 3 BASIC8.77□□□□□ -1.01
Traf1P39428 Gm22000-201ENSMUST00000153087 730 ntTSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 A930031H19Rik-202ENSMUST00000153810 949 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 4930551L18Rik-201ENSMUST00000156086 700 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Gm22035-201ENSMUST00000157284 228 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Gm25164-201ENSMUST00000158908 116 ntBASIC8.77□□□□□ -1.01
Traf1P39428 1700066B17Rik-203ENSMUST00000191299 536 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Gm42424-201ENSMUST00000198319 376 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Gm42723-201ENSMUST00000199966 1044 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Gm32842-201ENSMUST00000212653 738 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Gm4668-201ENSMUST00000214742 943 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 AC166361.1-201ENSMUST00000218567 403 ntTSL 3 BASIC8.77□□□□□ -1.01
Traf1P39428 AC163354.2-201ENSMUST00000221741 649 ntTSL 3 BASIC8.77□□□□□ -1.01
Traf1P39428 Gcnt2-204ENSMUST00000223570 335 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Cthrc1-204ENSMUST00000226433 596 ntBASIC8.77□□□□□ -1.01
Traf1P39428 AC134414.1-201ENSMUST00000228499 1221 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Ly6g-201ENSMUST00000023246 336 ntTSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Klrc2-201ENSMUST00000071920 1098 ntAPPRIS ALT2 TSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Gm20900-201ENSMUST00000078729 472 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Itgam-202ENSMUST00000106240 3325 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Rassf6-206ENSMUST00000202784 1919 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Gbp2b-201ENSMUST00000029936 2823 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 9530027J09Rik-201ENSMUST00000180584 1684 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 CR974429.2-201ENSMUST00000221883 1696 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Arfgef3-202ENSMUST00000215836 14579 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Ankrd55-203ENSMUST00000165593 2749 ntAPPRIS ALT2 TSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Usp8-202ENSMUST00000110416 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Blm-201ENSMUST00000081314 4598 ntAPPRIS P3 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 4921525O09Rik-201ENSMUST00000220691 3270 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Pan2-203ENSMUST00000218315 4379 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Nrxn3-210ENSMUST00000167887 3303 ntTSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Gm37618-201ENSMUST00000192891 3075 ntBASIC8.77□□□□□ -1.01
Traf1P39428 Pfkfb1-202ENSMUST00000112713 1872 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
Traf1P39428 Plscr2-201ENSMUST00000034932 1874 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
Traf1P39428 Krt39-202ENSMUST00000107445 1633 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
Traf1P39428 Gm15731-201ENSMUST00000146887 2195 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 Ehbp1-207ENSMUST00000180360 4971 ntAPPRIS P3 TSL 5 BASIC8.76□□□□□ -1.01
Traf1P39428 CT010453.1-201ENSMUST00000226795 2201 ntBASIC8.76□□□□□ -1.01
Traf1P39428 A830082K12Rik-207ENSMUST00000183171 4176 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 3830408C21Rik-202ENSMUST00000223895 1689 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm26873-201ENSMUST00000181390 2368 ntTSL 5 BASIC8.76□□□□□ -1.01
Traf1P39428 Adcy10-202ENSMUST00000111439 5193 ntAPPRIS ALT2 TSL 5 BASIC8.76□□□□□ -1.01
Traf1P39428 Stmn1-203ENSMUST00000105868 967 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 Eif3m-202ENSMUST00000111110 817 ntTSL 5 BASIC8.76□□□□□ -1.01
Traf1P39428 Gm13229-201ENSMUST00000118238 340 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm13521-201ENSMUST00000118922 866 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm11474-201ENSMUST00000120814 277 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm15346-201ENSMUST00000143638 475 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 BC016548-201ENSMUST00000144657 640 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 Gm13663-202ENSMUST00000145563 643 ntTSL 5 BASIC8.76□□□□□ -1.01
Traf1P39428 Polr3g-204ENSMUST00000161920 733 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 Gm15734-201ENSMUST00000163076 1040 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 Rsph10b-204ENSMUST00000169758 702 ntTSL 5 BASIC8.76□□□□□ -1.01
Traf1P39428 Gm15013-202ENSMUST00000183728 801 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
Traf1P39428 Gm28064-201ENSMUST00000185639 858 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Olfr318-201ENSMUST00000189911 1026 ntAPPRIS P1 BASIC8.76□□□□□ -1.01
Traf1P39428 Gm26413-201ENSMUST00000196783 126 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Hcfc1r1-ps1-201ENSMUST00000198911 346 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm19172-201ENSMUST00000203170 1246 ntBASIC8.76□□□□□ -1.01
Traf1P39428 4930425L21Rik-202ENSMUST00000205073 871 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 Olfr1422-ps1-201ENSMUST00000208076 743 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm45506-201ENSMUST00000211620 280 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm30853-201ENSMUST00000218367 810 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
Traf1P39428 AC192091.1-201ENSMUST00000218668 439 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm18503-201ENSMUST00000220340 728 ntBASIC8.76□□□□□ -1.01
Traf1P39428 Gm5791-201ENSMUST00000220840 489 ntBASIC8.76□□□□□ -1.01
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms