Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm23810-201ENSMUST00000175150 74 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 Mir7211-201ENSMUST00000184071 63 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 A630095E13Rik-202ENSMUST00000184611 536 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
Col18a1P39061 Gm20379-201ENSMUST00000188317 1204 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Col18a1P39061 Gm21739-202ENSMUST00000188917 933 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Col18a1P39061 Gm38254-201ENSMUST00000192276 1009 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 Gm2229-201ENSMUST00000193328 710 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 Gm43392-201ENSMUST00000196560 434 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 Gm2089-201ENSMUST00000218294 479 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 Gm4803-201ENSMUST00000218729 1279 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 AC165155.1-201ENSMUST00000228932 445 ntBASIC9.76□□□□□ -0.85
Col18a1P39061 Snrpd1-201ENSMUST00000002551 837 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Frmd6-201ENSMUST00000057859 4662 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Gm35206-201ENSMUST00000217945 1642 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Ugt3a2-201ENSMUST00000072403 2329 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Bcl2l11-202ENSMUST00000089634 2301 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
Col18a1P39061 Kpna6-202ENSMUST00000102590 5710 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Lrrc49-203ENSMUST00000114032 2586 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Olfr1361-202ENSMUST00000214321 2792 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
Col18a1P39061 Unc5c-201ENSMUST00000075282 3890 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Map4k4-209ENSMUST00000192509 3918 ntAPPRIS P3 TSL 2 BASIC9.76□□□□□ -0.85
Col18a1P39061 E330035G20Rik-201ENSMUST00000221094 3002 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Met-201ENSMUST00000080469 4140 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC9.76□□□□□ -0.85
Col18a1P39061 Slco1b2-204ENSMUST00000203597 1965 ntAPPRIS ALT2 TSL 5 BASIC9.76□□□□□ -0.85
Col18a1P39061 Gm26849-201ENSMUST00000180561 1842 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Drosha-201ENSMUST00000090292 4519 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Stat6-201ENSMUST00000092074 3775 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Slco2b1-203ENSMUST00000107088 4369 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
Col18a1P39061 Ncoa1-209ENSMUST00000220434 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm22927-201ENSMUST00000104268 131 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Gm5793-201ENSMUST00000119393 630 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Gm13237-201ENSMUST00000122151 635 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Gm17048-201ENSMUST00000179266 847 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Gm27295-201ENSMUST00000184264 153 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 1700108F19Rik-208ENSMUST00000191447 660 ntTSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm43391-203ENSMUST00000198110 1001 ntTSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm18851-201ENSMUST00000210087 1058 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Serpina3a-201ENSMUST00000021496 1269 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 Olfr735-201ENSMUST00000049729 1065 ntAPPRIS P2 BASIC9.75□□□□□ -0.85
Col18a1P39061 Olfr166-201ENSMUST00000074739 1040 ntAPPRIS P1 BASIC9.75□□□□□ -0.85
Col18a1P39061 Uqcrh-202ENSMUST00000078676 547 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Fam47e-201ENSMUST00000082382 750 ntTSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 Ppfibp2-201ENSMUST00000040056 3310 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Gria4-201ENSMUST00000027020 5441 ntAPPRIS ALT1 TSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 Nfam1-203ENSMUST00000109503 2834 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Plcb1-201ENSMUST00000070724 3853 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Tex11-201ENSMUST00000009814 3250 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm11872-201ENSMUST00000141819 2219 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Nutm1-201ENSMUST00000043970 3731 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm43980-201ENSMUST00000204899 1612 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Gm16316-201ENSMUST00000154065 3393 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Commd8-201ENSMUST00000013693 3895 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm43917-201ENSMUST00000191984 2360 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 F830045P16Rik-201ENSMUST00000050309 1925 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC9.75□□□□□ -0.85
Col18a1P39061 Synj1-210ENSMUST00000170853 7012 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm14466-201ENSMUST00000119028 451 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Tex35-203ENSMUST00000119526 679 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 4930480G23Rik-201ENSMUST00000125909 1013 ntTSL 5 BASIC9.75□□□□□ -0.85
Col18a1P39061 Cfhr3-201ENSMUST00000170441 1022 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Gm26557-201ENSMUST00000180756 493 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 1700012I11Rik-201ENSMUST00000187233 1039 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Gm32585-201ENSMUST00000198586 764 ntTSL 3 BASIC9.75□□□□□ -0.85
Col18a1P39061 1700013A02Rik-201ENSMUST00000202969 645 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Gm18690-201ENSMUST00000204488 985 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 AL929555.1-201ENSMUST00000215283 509 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Olfr342-201ENSMUST00000074192 1054 ntAPPRIS P1 BASIC9.75□□□□□ -0.85
Col18a1P39061 n-R5-8s1-201ENSMUST00000083988 148 ntBASIC9.75□□□□□ -0.85
Col18a1P39061 Wfdc8-203ENSMUST00000109339 3227 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
Col18a1P39061 Abcc5-204ENSMUST00000115547 5372 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
Col18a1P39061 Cfb-206ENSMUST00000154526 2397 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Musk-208ENSMUST00000179951 3376 ntTSL 5 BASIC9.74□□□□□ -0.85
Col18a1P39061 Filip1-201ENSMUST00000093811 4640 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Sltm-201ENSMUST00000049263 3691 ntAPPRIS P2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Trappc13-203ENSMUST00000141557 3502 ntAPPRIS ALT1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Abca8a-201ENSMUST00000046223 5614 ntAPPRIS P2 TSL 5 BASIC9.74□□□□□ -0.85
Col18a1P39061 C330007P06Rik-202ENSMUST00000115248 3340 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Ghitm-202ENSMUST00000165649 3188 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Ndrg3-203ENSMUST00000109558 4023 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Gm37499-201ENSMUST00000194683 3478 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 Gm26067-201ENSMUST00000103789 110 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 Rps12-ps5-201ENSMUST00000118272 389 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 Gm3140-201ENSMUST00000163523 481 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 Olfr92-201ENSMUST00000168659 939 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
Col18a1P39061 AF067063-201ENSMUST00000179455 590 ntAPPRIS P1 BASIC9.74□□□□□ -0.85
Col18a1P39061 Gm5260-201ENSMUST00000186157 949 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 Gm42707-202ENSMUST00000196668 618 ntTSL 3 BASIC9.74□□□□□ -0.85
Col18a1P39061 Gm45044-201ENSMUST00000208078 396 ntTSL 5 BASIC9.74□□□□□ -0.85
Col18a1P39061 Gm44840-201ENSMUST00000208983 1168 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Gm5055-201ENSMUST00000215697 581 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 AC129597.1-201ENSMUST00000223046 1234 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 AC157572.4-201ENSMUST00000228203 549 ntBASIC9.74□□□□□ -0.85
Col18a1P39061 Tcl1b2-201ENSMUST00000081379 1009 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Rtp4-201ENSMUST00000038423 1573 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Cntrob-201ENSMUST00000092973 3861 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Col18a1P39061 Agbl2-201ENSMUST00000037206 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms