Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm13828-201ENSMUST00000122278 363 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm15941-204ENSMUST00000135401 726 ntTSL 3 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm12223-201ENSMUST00000135468 528 ntTSL 3 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Tctex1d2-201ENSMUST00000014220 838 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm24298-201ENSMUST00000158299 60 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm6871-204ENSMUST00000171059 462 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm22649-201ENSMUST00000175134 298 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm26784-201ENSMUST00000181666 410 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm28208-201ENSMUST00000185941 1157 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm29672-201ENSMUST00000187118 1038 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm29331-201ENSMUST00000187215 605 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm28853-202ENSMUST00000188084 1157 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm29477-201ENSMUST00000189860 499 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm28430-201ENSMUST00000191031 628 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm28133-202ENSMUST00000191344 1158 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm32496-201ENSMUST00000191988 702 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm27680-202ENSMUST00000199221 807 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm42964-201ENSMUST00000202965 382 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm8686-201ENSMUST00000203028 388 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm44203-201ENSMUST00000203134 307 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm6375-201ENSMUST00000205201 1145 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm20670-201ENSMUST00000206468 338 ntTSL 3 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Chmp2a-204ENSMUST00000211344 606 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Chmp2a-206ENSMUST00000211626 726 ntTSL 2 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm34418-201ENSMUST00000212879 309 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 AC108846.3-201ENSMUST00000214078 247 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Olfr602-ps1-202ENSMUST00000218213 1169 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Rpl7a-ps1-201ENSMUST00000223350 793 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 CT009550.2-201ENSMUST00000228851 399 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Hist1h1t-201ENSMUST00000041052 912 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Mir187-201ENSMUST00000083598 61 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm37952-202ENSMUST00000192516 1497 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 AC210924.1-201ENSMUST00000221183 2705 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 AC121504.1-201ENSMUST00000221385 2705 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 AC139758.3-201ENSMUST00000226853 2704 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Ptpn22-201ENSMUST00000029433 2743 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Rad21l-202ENSMUST00000180195 1659 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Cops2-202ENSMUST00000110462 1853 ntTSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Crbn-202ENSMUST00000113239 2084 ntAPPRIS P4 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gm29670-201ENSMUST00000190228 2491 ntBASIC6.06□□□□□ -1.44
Hmgb3O54879 Tmem229b-202ENSMUST00000070174 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Myot-201ENSMUST00000025349 2209 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Mbd4-202ENSMUST00000122816 2415 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Gbp2b-201ENSMUST00000029936 2823 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Phf6-202ENSMUST00000101587 3639 ntTSL 2 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Vmn1r57-204ENSMUST00000228062 2365 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Tmod2-206ENSMUST00000215036 1797 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Olfr399-202ENSMUST00000215915 1796 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
Hmgb3O54879 Tmem87a-203ENSMUST00000110729 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
Hmgb3O54879 Cr2-202ENSMUST00000082321 6207 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Teddm1b-201ENSMUST00000055314 2527 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Hmgb3O54879 AC126028.1-201ENSMUST00000226218 2123 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 AC123954.1-201ENSMUST00000222404 3272 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Copa-201ENSMUST00000027833 4351 ntTSL 5 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gpbp1l1-201ENSMUST00000030460 3588 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Coro2a-203ENSMUST00000107757 4124 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Tespa1-201ENSMUST00000042586 1663 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm5431-202ENSMUST00000109210 2971 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 4930524O08Rik-201ENSMUST00000183387 1451 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm3139-203ENSMUST00000202642 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Igkv14-130-201ENSMUST00000103307 350 ntAPPRIS ALT2 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm25762-201ENSMUST00000103984 132 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm25095-201ENSMUST00000104047 131 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm11416-201ENSMUST00000119111 863 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm11763-201ENSMUST00000119964 312 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm14332-201ENSMUST00000121982 899 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm13776-201ENSMUST00000122236 1261 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm28845-201ENSMUST00000144760 733 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Scarna17-201ENSMUST00000158064 79 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm20500-201ENSMUST00000174621 321 ntTSL 3 BASIC6.05□□□□□ -1.44
Hmgb3O54879 4921523L03Rik-201ENSMUST00000175729 1186 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Ighv6-4-201ENSMUST00000177949 297 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm9423-201ENSMUST00000183173 997 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm27187-202ENSMUST00000184873 606 ntTSL 3 BASIC6.05□□□□□ -1.44
Hmgb3O54879 I830127L07Rik-201ENSMUST00000187250 730 ntTSL 5 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Rpl22l1-206ENSMUST00000194649 525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Mir7230-201ENSMUST00000195977 56 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm7879-202ENSMUST00000200338 635 ntTSL 5 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm19065-201ENSMUST00000203269 788 ntTSL 5 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Klk1b14-ps-201ENSMUST00000206059 777 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm45024-201ENSMUST00000208274 623 ntTSL 3 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm8948-201ENSMUST00000216371 370 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm8689-201ENSMUST00000218709 712 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 AC164424.3-201ENSMUST00000220809 148 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm7986-201ENSMUST00000221336 551 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm18621-201ENSMUST00000222677 679 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 E130119H09Rik-201ENSMUST00000223176 978 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 AC166358.8-201ENSMUST00000223288 105 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 AC124739.1-201ENSMUST00000223433 148 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 4930428N03Rik-205ENSMUST00000225654 892 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 AC124196.1-201ENSMUST00000225970 1032 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 AC152394.1-201ENSMUST00000227360 1086 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Retnlb-201ENSMUST00000023328 695 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 n-R5s28-201ENSMUST00000082814 119 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm10581-201ENSMUST00000097986 231 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Anapc15-ps-201ENSMUST00000099328 426 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Tspan7-202ENSMUST00000115526 7067 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Hmgb3O54879 Gm37628-201ENSMUST00000194644 5440 ntBASIC6.05□□□□□ -1.44
Hmgb3O54879 Slmap-204ENSMUST00000112330 3962 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
Hmgb3O54879 Obox3-206ENSMUST00000174443 1979 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms