Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Gm43909-201ENSMUST00000203443 1876 ntBASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Col13a1Q9R1N9 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col13a1Q9R1N9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Mir1199-201ENSMUST00000117015 119 ntBASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gm11249-201ENSMUST00000117071 859 ntBASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gm10231-201ENSMUST00000181584 441 ntBASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gm18666-201ENSMUST00000190039 958 ntBASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gm10175-202ENSMUST00000208752 441 ntBASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col13a1Q9R1N9 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 CT010444.2-201ENSMUST00000217877 1629 ntBASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Gm15378-201ENSMUST00000121894 207 ntBASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Gm10459-201ENSMUST00000202708 1155 ntBASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col13a1Q9R1N9 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Gm7367-201ENSMUST00000057611 492 ntBASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Col13a1Q9R1N9 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col13a1Q9R1N9 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col13a1Q9R1N9 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col13a1Q9R1N9 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col13a1Q9R1N9 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col13a1Q9R1N9 Gm43545-201ENSMUST00000196765 2779 ntBASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms