Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Copb1Q9JIF7 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.27■□□□□ 0.84
Copb1Q9JIF7 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.27■□□□□ 0.83
Copb1Q9JIF7 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Copb1Q9JIF7 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Copb1Q9JIF7 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.27■□□□□ 0.83
Copb1Q9JIF7 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Copb1Q9JIF7 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Copb1Q9JIF7 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Copb1Q9JIF7 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Copb1Q9JIF7 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.24■□□□□ 0.83
Copb1Q9JIF7 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.24■□□□□ 0.83
Copb1Q9JIF7 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Copb1Q9JIF7 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Copb1Q9JIF7 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Copb1Q9JIF7 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Copb1Q9JIF7 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms