Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Gm8493-201ENSMUST00000196881 489 ntBASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Lima1Q9ERG0 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.27■□□□□ 0.51
Lima1Q9ERG0 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Lima1Q9ERG0 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Lima1Q9ERG0 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Lima1Q9ERG0 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Gm6139-201ENSMUST00000079261 882 ntBASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Lima1Q9ERG0 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.26■□□□□ 0.51
Lima1Q9ERG0 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Smad6-203ENSMUST00000179458 273 ntBASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
Lima1Q9ERG0 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lima1Q9ERG0 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lima1Q9ERG0 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Lima1Q9ERG0 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lima1Q9ERG0 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Lima1Q9ERG0 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Lima1Q9ERG0 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Lima1Q9ERG0 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lima1Q9ERG0 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lima1Q9ERG0 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Lima1Q9ERG0 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Lima1Q9ERG0 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Lima1Q9ERG0 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Lima1Q9ERG0 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms