Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Vps28Q9D1C8 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Vps28Q9D1C8 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Vps28Q9D1C8 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Vps28Q9D1C8 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Vps28Q9D1C8 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Gm5408-201ENSMUST00000197998 747 ntBASIC18.95■□□□□ 0.62
Vps28Q9D1C8 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Vps28Q9D1C8 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Vps28Q9D1C8 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Vps28Q9D1C8 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Vps28Q9D1C8 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Vps28Q9D1C8 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Vps28Q9D1C8 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms