Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Usp28Q5I043 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC21.1■□□□□ 0.97
Usp28Q5I043 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Gm19094-201ENSMUST00000209791 1246 ntBASIC21.1■□□□□ 0.97
Usp28Q5I043 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Usp28Q5I043 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Usp28Q5I043 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Usp28Q5I043 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Usp28Q5I043 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Usp28Q5I043 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.09■□□□□ 0.97
Usp28Q5I043 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.09■□□□□ 0.97
Usp28Q5I043 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
Usp28Q5I043 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.09■□□□□ 0.97
Usp28Q5I043 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Usp28Q5I043 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp28Q5I043 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Usp28Q5I043 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Usp28Q5I043 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC21.08■□□□□ 0.97
Usp28Q5I043 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp28Q5I043 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.08■□□□□ 0.97
Usp28Q5I043 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Usp28Q5I043 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Usp28Q5I043 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Usp28Q5I043 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Usp28Q5I043 Gm44832-201ENSMUST00000208849 2303 ntBASIC21.07■□□□□ 0.96
Usp28Q5I043 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp28Q5I043 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Usp28Q5I043 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.07■□□□□ 0.96
Usp28Q5I043 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp28Q5I043 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
Usp28Q5I043 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp28Q5I043 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Usp28Q5I043 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
Usp28Q5I043 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp28Q5I043 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp28Q5I043 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp28Q5I043 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Usp28Q5I043 Reep4-203ENSMUST00000226563 1444 ntBASIC21.05■□□□□ 0.96
Usp28Q5I043 Fst-202ENSMUST00000223640 2612 ntBASIC21.05■□□□□ 0.96
Usp28Q5I043 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp28Q5I043 Gm13146-201ENSMUST00000118508 780 ntBASIC21.05■□□□□ 0.96
Usp28Q5I043 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.05■□□□□ 0.96
Usp28Q5I043 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp28Q5I043 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp28Q5I043 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Usp28Q5I043 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp28Q5I043 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC21.05■□□□□ 0.96
Usp28Q5I043 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.05■□□□□ 0.96
Usp28Q5I043 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp28Q5I043 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp28Q5I043 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usp28Q5I043 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp28Q5I043 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
Usp28Q5I043 Gm38308-201ENSMUST00000194934 1809 ntBASIC21.04■□□□□ 0.96
Usp28Q5I043 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp28Q5I043 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp28Q5I043 Gm37805-201ENSMUST00000192612 1094 ntBASIC21.04■□□□□ 0.96
Usp28Q5I043 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
Usp28Q5I043 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp28Q5I043 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Usp28Q5I043 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usp28Q5I043 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Usp28Q5I043 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp28Q5I043 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
Usp28Q5I043 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp28Q5I043 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.03■□□□□ 0.96
Usp28Q5I043 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC21.03■□□□□ 0.96
Usp28Q5I043 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Usp28Q5I043 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp28Q5I043 Gm45606-201ENSMUST00000209836 2795 ntBASIC21.03■□□□□ 0.96
Usp28Q5I043 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usp28Q5I043 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Usp28Q5I043 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Usp28Q5I043 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
Usp28Q5I043 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp28Q5I043 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Usp28Q5I043 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usp28Q5I043 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Usp28Q5I043 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC21.02■□□□□ 0.96
Usp28Q5I043 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Usp28Q5I043 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Usp28Q5I043 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms