Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shox2P70390 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shox2P70390 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Shox2P70390 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.36■□□□□ 0.53
Shox2P70390 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shox2P70390 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC18.36■□□□□ 0.53
Shox2P70390 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shox2P70390 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shox2P70390 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shox2P70390 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.36■□□□□ 0.53
Shox2P70390 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.35■□□□□ 0.53
Shox2P70390 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shox2P70390 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Shox2P70390 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shox2P70390 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Shox2P70390 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Shox2P70390 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.35■□□□□ 0.53
Shox2P70390 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.35■□□□□ 0.53
Shox2P70390 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shox2P70390 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shox2P70390 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC18.35■□□□□ 0.53
Shox2P70390 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC18.35■□□□□ 0.53
Shox2P70390 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shox2P70390 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shox2P70390 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Shox2P70390 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.34■□□□□ 0.53
Shox2P70390 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Shox2P70390 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Shox2P70390 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.34■□□□□ 0.53
Shox2P70390 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shox2P70390 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Shox2P70390 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Shox2P70390 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Shox2P70390 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Shox2P70390 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Shox2P70390 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Shox2P70390 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Shox2P70390 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shox2P70390 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.33■□□□□ 0.52
Shox2P70390 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Shox2P70390 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Shox2P70390 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.33■□□□□ 0.52
Shox2P70390 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shox2P70390 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shox2P70390 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shox2P70390 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shox2P70390 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shox2P70390 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.32■□□□□ 0.52
Shox2P70390 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Shox2P70390 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Shox2P70390 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Shox2P70390 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shox2P70390 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Shox2P70390 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.31■□□□□ 0.52
Shox2P70390 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Shox2P70390 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Shox2P70390 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Shox2P70390 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.3■□□□□ 0.52
Shox2P70390 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.3■□□□□ 0.52
Shox2P70390 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Gm9194-201ENSMUST00000220749 1447 ntBASIC18.3■□□□□ 0.52
Shox2P70390 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Shox2P70390 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms