Protein–RNA interactions for Protein: P59114

Pcif1, Phosphorylated CTD-interacting factor 1, mousemouse

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1P59114 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Pcif1P59114 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Pcif1P59114 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Pcif1P59114 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Pcif1P59114 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.81■□□□□ 0.92
Pcif1P59114 AC160393.1-201ENSMUST00000218378 1279 ntBASIC20.81■□□□□ 0.92
Pcif1P59114 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Pcif1P59114 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Pcif1P59114 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Pcif1P59114 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Pcif1P59114 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.8■□□□□ 0.92
Pcif1P59114 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.8■□□□□ 0.92
Pcif1P59114 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Gm4968-201ENSMUST00000071458 858 ntBASIC20.8■□□□□ 0.92
Pcif1P59114 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Pcif1P59114 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Pcif1P59114 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Pcif1P59114 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.79■□□□□ 0.92
Pcif1P59114 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Pcif1P59114 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.78■□□□□ 0.92
Pcif1P59114 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.78■□□□□ 0.92
Pcif1P59114 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Pcif1P59114 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Pcif1P59114 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.77■□□□□ 0.92
Pcif1P59114 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Pcif1P59114 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Pcif1P59114 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Pcif1P59114 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Pcif1P59114 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Pcif1P59114 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Pcif1P59114 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
Pcif1P59114 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Pcif1P59114 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Pcif1P59114 Golph3-205ENSMUST00000228671 2842 ntBASIC20.77■□□□□ 0.91
Pcif1P59114 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Pcif1P59114 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Pcif1P59114 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
Pcif1P59114 Gm12441-201ENSMUST00000121806 588 ntBASIC20.76■□□□□ 0.91
Pcif1P59114 Gm26524-201ENSMUST00000192339 390 ntBASIC20.76■□□□□ 0.91
Pcif1P59114 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Pcif1P59114 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.76■□□□□ 0.91
Pcif1P59114 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Pcif1P59114 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.76■□□□□ 0.91
Pcif1P59114 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.75■□□□□ 0.91
Pcif1P59114 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.75■□□□□ 0.91
Pcif1P59114 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.75■□□□□ 0.91
Pcif1P59114 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.75■□□□□ 0.91
Pcif1P59114 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.75■□□□□ 0.91
Pcif1P59114 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Pcif1P59114 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Pcif1P59114 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Pcif1P59114 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.74■□□□□ 0.91
Pcif1P59114 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Rab3c-203ENSMUST00000224180 967 ntBASIC20.74■□□□□ 0.91
Pcif1P59114 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcif1P59114 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.73■□□□□ 0.91
Pcif1P59114 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcif1P59114 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.73■□□□□ 0.91
Pcif1P59114 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms