Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox3P53784 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox3P53784 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.67■□□□□ 0.42
Sox3P53784 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Sox3P53784 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Sox3P53784 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Sox3P53784 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox3P53784 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox3P53784 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Sox3P53784 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox3P53784 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.65■□□□□ 0.42
Sox3P53784 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Sox3P53784 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Sox3P53784 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox3P53784 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Sox3P53784 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Sox3P53784 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Sox3P53784 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Sox3P53784 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.42
Sox3P53784 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Sox3P53784 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Sox3P53784 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Sox3P53784 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox3P53784 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Sox3P53784 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.64■□□□□ 0.41
Sox3P53784 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Sox3P53784 Gm26524-201ENSMUST00000192339 390 ntBASIC17.64■□□□□ 0.41
Sox3P53784 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Sox3P53784 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox3P53784 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox3P53784 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox3P53784 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Sox3P53784 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox3P53784 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Sox3P53784 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC17.63■□□□□ 0.41
Sox3P53784 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.63■□□□□ 0.41
Sox3P53784 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.63■□□□□ 0.41
Sox3P53784 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.63■□□□□ 0.41
Sox3P53784 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sox3P53784 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.62■□□□□ 0.41
Sox3P53784 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Sox3P53784 Gm715-201ENSMUST00000117865 831 ntBASIC17.62■□□□□ 0.41
Sox3P53784 Gm11643-201ENSMUST00000119578 864 ntBASIC17.62■□□□□ 0.41
Sox3P53784 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
Sox3P53784 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.62■□□□□ 0.41
Sox3P53784 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.62■□□□□ 0.41
Sox3P53784 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Sox3P53784 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
Sox3P53784 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.62■□□□□ 0.41
Sox3P53784 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
Sox3P53784 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sox3P53784 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.62■□□□□ 0.41
Sox3P53784 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sox3P53784 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sox3P53784 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sox3P53784 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sox3P53784 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.61■□□□□ 0.41
Sox3P53784 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sox3P53784 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Sox3P53784 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Sox3P53784 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Sox3P53784 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Sox3P53784 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sox3P53784 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sox3P53784 Gm13534-201ENSMUST00000121169 513 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms