Protein–RNA interactions for Protein: P43680

Sox18, Transcription factor SOX-18, mousemouse

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox18P43680 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sox18P43680 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.76■□□□□ 0.43
Sox18P43680 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Sox18P43680 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC17.75■□□□□ 0.43
Sox18P43680 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Sox18P43680 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Sox18P43680 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.75■□□□□ 0.43
Sox18P43680 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sox18P43680 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.74■□□□□ 0.43
Sox18P43680 Gm30025-201ENSMUST00000218555 728 ntBASIC17.74■□□□□ 0.43
Sox18P43680 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sox18P43680 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC17.73■□□□□ 0.43
Sox18P43680 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.73■□□□□ 0.43
Sox18P43680 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
Sox18P43680 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.73■□□□□ 0.43
Sox18P43680 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sox18P43680 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.73■□□□□ 0.43
Sox18P43680 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.72■□□□□ 0.43
Sox18P43680 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.72■□□□□ 0.43
Sox18P43680 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Sox18P43680 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC17.72■□□□□ 0.43
Sox18P43680 Gm21814-202ENSMUST00000203277 873 ntBASIC17.72■□□□□ 0.43
Sox18P43680 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sox18P43680 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Sox18P43680 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Sox18P43680 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.71■□□□□ 0.43
Sox18P43680 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Sox18P43680 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Sox18P43680 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Sox18P43680 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.71■□□□□ 0.43
Sox18P43680 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Sox18P43680 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sox18P43680 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Sox18P43680 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Sox18P43680 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.7■□□□□ 0.42
Sox18P43680 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox18P43680 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC17.7■□□□□ 0.42
Sox18P43680 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox18P43680 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox18P43680 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox18P43680 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox18P43680 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Sox18P43680 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Sox18P43680 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Sox18P43680 Gm13559-201ENSMUST00000120476 863 ntBASIC17.69■□□□□ 0.42
Sox18P43680 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sox18P43680 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox18P43680 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms