Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk1P22518 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Clk1P22518 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk1P22518 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Clk1P22518 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Clk1P22518 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Clk1P22518 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Gm13146-201ENSMUST00000118508 780 ntBASIC17.14■□□□□ 0.33
Clk1P22518 Gm13234-201ENSMUST00000120010 747 ntBASIC17.14■□□□□ 0.33
Clk1P22518 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.14■□□□□ 0.33
Clk1P22518 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Clk1P22518 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Clk1P22518 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Clk1P22518 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
Clk1P22518 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Clk1P22518 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Clk1P22518 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.13■□□□□ 0.33
Clk1P22518 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.13■□□□□ 0.33
Clk1P22518 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.13■□□□□ 0.33
Clk1P22518 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.13■□□□□ 0.33
Clk1P22518 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Clk1P22518 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Clk1P22518 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Clk1P22518 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Clk1P22518 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.12■□□□□ 0.33
Clk1P22518 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Clk1P22518 Gm42778-201ENSMUST00000199644 553 ntBASIC17.12■□□□□ 0.33
Clk1P22518 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC17.12■□□□□ 0.33
Clk1P22518 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Clk1P22518 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC17.12■□□□□ 0.33
Clk1P22518 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Clk1P22518 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Clk1P22518 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Gm15039-201ENSMUST00000118914 875 ntBASIC17.11■□□□□ 0.33
Clk1P22518 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Clk1P22518 Gm18284-201ENSMUST00000172604 624 ntBASIC17.11■□□□□ 0.33
Clk1P22518 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.11■□□□□ 0.33
Clk1P22518 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Clk1P22518 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Clk1P22518 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.1■□□□□ 0.33
Clk1P22518 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk1P22518 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Clk1P22518 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
Clk1P22518 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Clk1P22518 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.1■□□□□ 0.33
Clk1P22518 Gm38205-201ENSMUST00000192243 258 ntBASIC17.1■□□□□ 0.33
Clk1P22518 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Clk1P22518 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.1■□□□□ 0.33
Clk1P22518 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.1■□□□□ 0.33
Clk1P22518 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk1P22518 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk1P22518 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Clk1P22518 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk1P22518 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.1■□□□□ 0.33
Clk1P22518 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Clk1P22518 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms