Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.06■□□□□ 0.8
RaraP11416 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RaraP11416 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RaraP11416 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RaraP11416 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RaraP11416 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RaraP11416 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.05■□□□□ 0.8
RaraP11416 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RaraP11416 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RaraP11416 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RaraP11416 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RaraP11416 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
RaraP11416 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.05■□□□□ 0.8
RaraP11416 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
RaraP11416 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RaraP11416 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.03■□□□□ 0.8
RaraP11416 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RaraP11416 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
RaraP11416 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RaraP11416 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RaraP11416 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
RaraP11416 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RaraP11416 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RaraP11416 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.02■□□□□ 0.8
RaraP11416 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RaraP11416 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.02■□□□□ 0.8
RaraP11416 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RaraP11416 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RaraP11416 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
RaraP11416 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RaraP11416 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
RaraP11416 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RaraP11416 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.02■□□□□ 0.79
RaraP11416 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
RaraP11416 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.01■□□□□ 0.79
RaraP11416 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.01■□□□□ 0.79
RaraP11416 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.01■□□□□ 0.79
RaraP11416 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.01■□□□□ 0.79
RaraP11416 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
RaraP11416 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
RaraP11416 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RaraP11416 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC20.01■□□□□ 0.79
RaraP11416 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
RaraP11416 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20■□□□□ 0.79
RaraP11416 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RaraP11416 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20■□□□□ 0.79
RaraP11416 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.99■□□□□ 0.79
RaraP11416 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.99■□□□□ 0.79
RaraP11416 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.99■□□□□ 0.79
RaraP11416 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.99■□□□□ 0.79
RaraP11416 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.99■□□□□ 0.79
RaraP11416 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
RaraP11416 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RaraP11416 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.99■□□□□ 0.79
RaraP11416 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms