Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdha4O88689 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdha4O88689 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdha4O88689 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.74■□□□□ 0.91
Pcdha4O88689 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.74■□□□□ 0.91
Pcdha4O88689 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdha4O88689 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Pcdha4O88689 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Pcdha4O88689 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha4O88689 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha4O88689 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha4O88689 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha4O88689 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha4O88689 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Pcdha4O88689 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.72■□□□□ 0.91
Pcdha4O88689 Gm26524-201ENSMUST00000192339 390 ntBASIC20.72■□□□□ 0.91
Pcdha4O88689 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Pcdha4O88689 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Pcdha4O88689 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.72■□□□□ 0.91
Pcdha4O88689 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Pcdha4O88689 Iqck-206ENSMUST00000208658 2891 ntBASIC20.71■□□□□ 0.91
Pcdha4O88689 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Pcdha4O88689 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Pcdha4O88689 Gm5408-201ENSMUST00000197998 747 ntBASIC20.71■□□□□ 0.91
Pcdha4O88689 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.71■□□□□ 0.91
Pcdha4O88689 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Pcdha4O88689 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Pcdha4O88689 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Pcdha4O88689 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.7■□□□□ 0.91
Pcdha4O88689 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.7■□□□□ 0.9
Pcdha4O88689 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.7■□□□□ 0.9
Pcdha4O88689 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Pcdha4O88689 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha4O88689 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha4O88689 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha4O88689 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha4O88689 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha4O88689 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.69■□□□□ 0.9
Pcdha4O88689 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Pcdha4O88689 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.69■□□□□ 0.9
Pcdha4O88689 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.69■□□□□ 0.9
Pcdha4O88689 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.69■□□□□ 0.9
Pcdha4O88689 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha4O88689 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Pcdha4O88689 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.69■□□□□ 0.9
Pcdha4O88689 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Pcdha4O88689 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.69■□□□□ 0.9
Pcdha4O88689 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.68■□□□□ 0.9
Pcdha4O88689 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 Rab3c-203ENSMUST00000224180 967 ntBASIC20.68■□□□□ 0.9
Pcdha4O88689 Gm4968-201ENSMUST00000071458 858 ntBASIC20.68■□□□□ 0.9
Pcdha4O88689 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Pcdha4O88689 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.68■□□□□ 0.9
Pcdha4O88689 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Pcdha4O88689 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.67■□□□□ 0.9
Pcdha4O88689 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Pcdha4O88689 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.67■□□□□ 0.9
Pcdha4O88689 Gm37805-201ENSMUST00000192612 1094 ntBASIC20.67■□□□□ 0.9
Pcdha4O88689 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Pcdha4O88689 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Pcdha4O88689 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.67■□□□□ 0.9
Pcdha4O88689 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Pcdha4O88689 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Pcdha4O88689 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Pcdha4O88689 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms