Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm26801-201ENSMUST00000180591 1219 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cux1P53564 Gm28991-201ENSMUST00000186584 543 ntTSL 5 BASIC11.46□□□□□ -0.57
Cux1P53564 Ly6c2-203ENSMUST00000188214 638 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cux1P53564 Gm43656-201ENSMUST00000197882 434 ntBASIC11.46□□□□□ -0.57
Cux1P53564 AC124778.1-201ENSMUST00000216013 162 ntBASIC11.46□□□□□ -0.57
Cux1P53564 Tespa1-202ENSMUST00000217702 1102 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cux1P53564 AC174678.3-201ENSMUST00000227568 362 ntBASIC11.46□□□□□ -0.57
Cux1P53564 Emc2-201ENSMUST00000022962 1231 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cux1P53564 Fpr2-201ENSMUST00000064068 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cux1P53564 AC187103.1-201ENSMUST00000224641 1475 ntBASIC11.46□□□□□ -0.57
Cux1P53564 Sestd1-201ENSMUST00000102659 2720 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cux1P53564 Olfr480-202ENSMUST00000217653 1876 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
Cux1P53564 Ccdc127-203ENSMUST00000160021 2682 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cux1P53564 Xpo4-201ENSMUST00000089482 3456 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
Cux1P53564 Gm3752-201ENSMUST00000164366 1817 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Cux1P53564 Upf3b-201ENSMUST00000076265 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cux1P53564 Gm18451-201ENSMUST00000196759 1719 ntBASIC11.46□□□□□ -0.58
Cux1P53564 Brox-201ENSMUST00000057062 3430 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cux1P53564 Kirrel3-206ENSMUST00000187625 4108 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cux1P53564 Gm26416-201ENSMUST00000104280 134 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Cep112-202ENSMUST00000106715 1161 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 AU015336-201ENSMUST00000159040 849 ntTSL 5 BASIC11.45□□□□□ -0.58
Cux1P53564 Gm7694-201ENSMUST00000179801 3827 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Cux1P53564 AC099760.1-201ENSMUST00000196300 153 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Gm42543-201ENSMUST00000198756 353 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Cux1P53564 Gm43495-201ENSMUST00000200060 205 ntTSL 5 BASIC11.45□□□□□ -0.58
Cux1P53564 Kitl-201ENSMUST00000020129 1260 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Gm17822-201ENSMUST00000204307 351 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Gm35024-201ENSMUST00000213359 972 ntTSL 5 BASIC11.45□□□□□ -0.58
Cux1P53564 Rpl17-ps6-201ENSMUST00000222192 532 ntBASIC11.45□□□□□ -0.58
Cux1P53564 AC159267.1-201ENSMUST00000226702 678 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Gm5528-201ENSMUST00000076314 480 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Olfr376-201ENSMUST00000078952 1210 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Cux1P53564 Olfr1265-201ENSMUST00000080311 930 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Cux1P53564 Olfr1269-201ENSMUST00000099756 1018 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Cux1P53564 Tcf4-206ENSMUST00000114982 3694 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Catsperg1-202ENSMUST00000069861 2251 ntTSL 2 BASIC11.45□□□□□ -0.58
Cux1P53564 Gm38315-201ENSMUST00000194286 2437 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Ptgfr-202ENSMUST00000106126 1535 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Myrfl-201ENSMUST00000048229 3164 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Slc3a1-201ENSMUST00000024944 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Gm10424-202ENSMUST00000201031 1848 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Cux1P53564 1600015I10Rik-201ENSMUST00000031837 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 4930447C04Rik-208ENSMUST00000136075 1970 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Cxcr1-202ENSMUST00000190313 1451 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Cux1P53564 Polr3f-201ENSMUST00000028914 4403 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Cd163-201ENSMUST00000032234 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Col28a1-201ENSMUST00000115537 4230 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Idh3a-201ENSMUST00000167866 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Gm28906-201ENSMUST00000191371 1779 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Igkv4-50-201ENSMUST00000103363 352 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Cux1P53564 Gm25093-201ENSMUST00000103993 132 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Cfap61-212ENSMUST00000152515 640 ntTSL 3 BASIC11.45□□□□□ -0.58
Cux1P53564 Lrrc32-201ENSMUST00000165205 3817 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Cux1P53564 Mir7033-201ENSMUST00000184259 81 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Scgb1b5-ps-201ENSMUST00000189491 280 ntBASIC11.45□□□□□ -0.58
Cux1P53564 1700094M23Rik-202ENSMUST00000198047 675 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cux1P53564 Gm4860-201ENSMUST00000200368 454 ntBASIC11.45□□□□□ -0.58
Cux1P53564 AC108437.1-201ENSMUST00000222170 776 ntTSL 5 BASIC11.45□□□□□ -0.58
Cux1P53564 AC116596.2-203ENSMUST00000227345 731 ntBASIC11.45□□□□□ -0.58
Cux1P53564 n-R5s217-201ENSMUST00000083341 116 ntBASIC11.45□□□□□ -0.58
Cux1P53564 Tmem30c-201ENSMUST00000023434 2973 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Cux1P53564 Sptan1-205ENSMUST00000113719 8018 ntTSL 5 BASIC11.44□□□□□ -0.58
Cux1P53564 Gm3072-201ENSMUST00000167712 1395 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Cux1P53564 Gm19031-201ENSMUST00000176280 1365 ntBASIC11.44□□□□□ -0.58
Cux1P53564 Gm44581-201ENSMUST00000206227 1693 ntTSL 5 BASIC11.44□□□□□ -0.58
Cux1P53564 Trim40-201ENSMUST00000087158 2117 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Mme-201ENSMUST00000029400 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Gm37170-201ENSMUST00000194488 1934 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Tmcc3-202ENSMUST00000117460 3217 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Smarcal1-201ENSMUST00000047615 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Zkscan16-201ENSMUST00000107554 2794 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Cux1P53564 Ttf2-201ENSMUST00000076941 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Gm35808-201ENSMUST00000204769 2602 ntBASIC11.44□□□□□ -0.58
Cux1P53564 Sox2ot-215ENSMUST00000199171 3486 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Anln-201ENSMUST00000040912 4605 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Abi1-212ENSMUST00000153931 2729 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
Cux1P53564 Tiam2-202ENSMUST00000169838 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Trbv13-3-201ENSMUST00000103271 340 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Cux1P53564 4930578G10Rik-202ENSMUST00000107984 762 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Cux1P53564 Gm12175-201ENSMUST00000122081 345 ntBASIC11.44□□□□□ -0.58
Cux1P53564 Gm15564-201ENSMUST00000144134 545 ntTSL 3 BASIC11.44□□□□□ -0.58
Cux1P53564 Gm16298-201ENSMUST00000161107 420 ntBASIC11.44□□□□□ -0.58
Cux1P53564 1110008L16Rik-206ENSMUST00000184980 888 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cux1P53564 Gm28556-201ENSMUST00000187489 673 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 1700025K24Rik-201ENSMUST00000190635 740 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 4930568G15Rik-202ENSMUST00000195635 996 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Gpn1-206ENSMUST00000202394 631 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 E230029C05Rik-204ENSMUST00000208266 875 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 AC122273.1-202ENSMUST00000213884 695 ntTSL 3 BASIC11.44□□□□□ -0.58
Cux1P53564 Gm46231-201ENSMUST00000220152 314 ntBASIC11.44□□□□□ -0.58
Cux1P53564 AC079644.2-201ENSMUST00000220581 322 ntBASIC11.44□□□□□ -0.58
Cux1P53564 Gm36758-201ENSMUST00000222594 310 ntBASIC11.44□□□□□ -0.58
Cux1P53564 AC124489.3-201ENSMUST00000224037 278 ntBASIC11.44□□□□□ -0.58
Cux1P53564 Gm6563-201ENSMUST00000056396 869 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Cux1P53564 Olfr1342-201ENSMUST00000060562 1002 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Cux1P53564 Gm13769-201ENSMUST00000077123 930 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Cux1P53564 Defa24-201ENSMUST00000080533 419 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cux1P53564 Zfp280d-217ENSMUST00000184517 3919 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 76.8 ms