Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Greb1-201ENSMUST00000048064 7940 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Abca17-201ENSMUST00000039324 5202 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 AC126806.1-201ENSMUST00000217349 3869 ntTSL 5 BASIC8.81□□□□□ -1
Col1a1P11087 Ighv14-4-201ENSMUST00000103475 333 ntAPPRIS ALT2 BASIC8.81□□□□□ -1
Col1a1P11087 Gm26417-201ENSMUST00000104274 135 ntBASIC8.81□□□□□ -1
Col1a1P11087 Gm16221-201ENSMUST00000117331 393 ntBASIC8.81□□□□□ -1
Col1a1P11087 Gm11889-201ENSMUST00000118402 1079 ntBASIC8.81□□□□□ -1
Col1a1P11087 Gm8662-201ENSMUST00000118644 574 ntBASIC8.81□□□□□ -1
Col1a1P11087 Rpl15-ps1-201ENSMUST00000120694 564 ntBASIC8.81□□□□□ -1
Col1a1P11087 Gm16336-201ENSMUST00000126011 380 ntTSL 2 BASIC8.81□□□□□ -1
Col1a1P11087 4931428L18Rik-201ENSMUST00000127775 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Gm17022-201ENSMUST00000166415 922 ntBASIC8.81□□□□□ -1
Col1a1P11087 Esd-209ENSMUST00000177181 835 ntTSL 5 BASIC8.81□□□□□ -1
Col1a1P11087 6720483E21Rik-201ENSMUST00000181654 1120 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Gm27360-201ENSMUST00000183487 80 ntBASIC8.81□□□□□ -1
Col1a1P11087 Ly6c2-203ENSMUST00000188214 638 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Platr10-201ENSMUST00000190602 1026 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Gm43553-201ENSMUST00000200900 685 ntBASIC8.81□□□□□ -1
Col1a1P11087 Gm39271-201ENSMUST00000212881 434 ntTSL 3 BASIC8.81□□□□□ -1
Col1a1P11087 AC153729.3-201ENSMUST00000213319 781 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 4930584E12Rik-201ENSMUST00000216646 981 ntBASIC8.81□□□□□ -1
Col1a1P11087 1700021G15Rik-201ENSMUST00000217671 528 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 4930471E15Rik-201ENSMUST00000221147 626 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 AC108437.1-201ENSMUST00000222170 776 ntTSL 5 BASIC8.81□□□□□ -1
Col1a1P11087 Vmn1r53-201ENSMUST00000076086 1122 ntAPPRIS P1 BASIC8.81□□□□□ -1
Col1a1P11087 E130018O15Rik-201ENSMUST00000069741 3776 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Tmem108-201ENSMUST00000049452 3574 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Gm26939-201ENSMUST00000177146 2261 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Gm11872-201ENSMUST00000141819 2219 ntTSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Mycbpap-202ENSMUST00000093945 3168 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Col1a1P11087 Gtf3c2-210ENSMUST00000202639 4200 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
Col1a1P11087 Uba1-202ENSMUST00000089217 4044 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Gm5493-201ENSMUST00000182063 1952 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 AC121870.2-201ENSMUST00000214343 1870 ntBASIC8.81□□□□□ -1
Col1a1P11087 Map4k4-215ENSMUST00000195259 3719 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Col1a1P11087 Cyp17a1-201ENSMUST00000026012 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Greb1-203ENSMUST00000159120 6346 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Skint7-201ENSMUST00000055014 1788 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Grik2-201ENSMUST00000079751 2610 ntTSL 2 BASIC8.8□□□□□ -1
Col1a1P11087 Trip11-201ENSMUST00000021605 9873 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Pogk-203ENSMUST00000131487 8692 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Nsun6-204ENSMUST00000114715 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Rnase4-201ENSMUST00000022428 1518 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Adgrg1-202ENSMUST00000179619 3616 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Adgrd1-203ENSMUST00000156437 4141 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Usp8-201ENSMUST00000028841 4145 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Ifit1-201ENSMUST00000102824 2656 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 AC158799.1-204ENSMUST00000217441 1321 ntTSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 CT030185.2-201ENSMUST00000222614 1310 ntBASIC8.8□□□□□ -1
Col1a1P11087 Gm42973-201ENSMUST00000197913 3200 ntBASIC8.8□□□□□ -1
Col1a1P11087 Ola1-203ENSMUST00000112055 1251 ntTSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 Setd5-202ENSMUST00000113155 6362 ntTSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Olfr1017-ps1-201ENSMUST00000121263 664 ntBASIC8.8□□□□□ -1
Col1a1P11087 Gm12175-201ENSMUST00000122081 345 ntBASIC8.8□□□□□ -1
Col1a1P11087 Oas1h-202ENSMUST00000171820 931 ntTSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 Gm8305-201ENSMUST00000180022 1195 ntBASIC8.8□□□□□ -1
Col1a1P11087 Gm4340-203ENSMUST00000181615 1258 ntAPPRIS P5 TSL 2 BASIC8.8□□□□□ -1
Col1a1P11087 Scgb1b16-ps-201ENSMUST00000186029 275 ntBASIC8.8□□□□□ -1
Col1a1P11087 Gm29611-201ENSMUST00000186132 1011 ntTSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 Gm29343-201ENSMUST00000187887 842 ntTSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 Scgb1b14-ps-201ENSMUST00000188286 275 ntBASIC8.8□□□□□ -1
Col1a1P11087 Gm29349-201ENSMUST00000188692 174 ntTSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Gm37920-201ENSMUST00000192952 749 ntBASIC8.8□□□□□ -1
Col1a1P11087 Gm6558-203ENSMUST00000195395 612 ntTSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 4930584F24Rik-204ENSMUST00000198070 1163 ntTSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 4833404L02Rik-201ENSMUST00000206290 908 ntBASIC8.8□□□□□ -1
Col1a1P11087 AC102312.1-203ENSMUST00000219530 763 ntTSL 2 BASIC8.8□□□□□ -1
Col1a1P11087 CT009550.2-201ENSMUST00000228851 399 ntBASIC8.8□□□□□ -1
Col1a1P11087 Adgrg4-201ENSMUST00000096431 1137 ntTSL 2 BASIC8.8□□□□□ -1
Col1a1P11087 Ttc26-205ENSMUST00000162554 4195 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Bivm-202ENSMUST00000114709 3570 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Gm11298-201ENSMUST00000120503 1799 ntBASIC8.8□□□□□ -1
Col1a1P11087 Olfr1241-202ENSMUST00000214743 2328 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 Calhm2-202ENSMUST00000140512 3377 ntTSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 9530027J09Rik-201ENSMUST00000180584 1684 ntTSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Luzp2-201ENSMUST00000082373 4901 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Hdac4-202ENSMUST00000097644 8100 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Btk-202ENSMUST00000113213 2121 ntTSL 5 BASIC8.8□□□□□ -1
Col1a1P11087 Gm28649-201ENSMUST00000189153 1581 ntBASIC8.8□□□□□ -1
Col1a1P11087 Gm35172-201ENSMUST00000196037 2649 ntBASIC8.8□□□□□ -1
Col1a1P11087 Prox2-202ENSMUST00000177289 3066 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Col1a1P11087 Gm37326-201ENSMUST00000192828 3071 ntBASIC8.8□□□□□ -1
Col1a1P11087 3830406C13Rik-201ENSMUST00000112669 2477 ntTSL 1 (best) BASIC8.79□□□□□ -1
Col1a1P11087 3830406C13Rik-202ENSMUST00000163392 2452 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Col1a1P11087 Gm43311-201ENSMUST00000200016 2377 ntBASIC8.79□□□□□ -1
Col1a1P11087 Gm11412-201ENSMUST00000144875 2800 ntTSL 1 (best) BASIC8.79□□□□□ -1
Col1a1P11087 Ugt3a2-201ENSMUST00000072403 2329 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Col1a1P11087 2900026A02Rik-202ENSMUST00000211733 10238 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Col1a1P11087 Gm3072-201ENSMUST00000167712 1395 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Col1a1P11087 Gm37074-201ENSMUST00000193444 1843 ntBASIC8.79□□□□□ -1
Col1a1P11087 Gm18957-201ENSMUST00000197623 1813 ntBASIC8.79□□□□□ -1
Col1a1P11087 Ptprr-201ENSMUST00000063470 3619 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
Col1a1P11087 Zscan4b-202ENSMUST00000210847 1779 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Col1a1P11087 Vmn1r37-205ENSMUST00000227923 1773 ntAPPRIS P2 BASIC8.79□□□□□ -1
Col1a1P11087 Ccr6-201ENSMUST00000097418 1755 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Col1a1P11087 Cbx3-204ENSMUST00000114446 1719 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
Col1a1P11087 Gm16427-202ENSMUST00000200745 1749 ntAPPRIS P5 TSL 2 BASIC8.79□□□□□ -1
Col1a1P11087 Ighv9-1-201ENSMUST00000103471 294 ntAPPRIS P1 BASIC8.79□□□□□ -1
Col1a1P11087 Ighv9-2-201ENSMUST00000103472 351 ntAPPRIS P1 BASIC8.79□□□□□ -1
Col1a1P11087 Gm22438-201ENSMUST00000104049 132 ntBASIC8.79□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 83.7 ms