Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Gm4898-201ENSMUST00000218519 832 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 CT572999.1-201ENSMUST00000220315 1260 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 CT030170.6-202ENSMUST00000223186 544 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 Snora9-201ENSMUST00000082579 133 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 Usp8-202ENSMUST00000110416 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Nup88Q8CEC0 Pnliprp1-201ENSMUST00000048644 1619 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Nup88Q8CEC0 Meis2-205ENSMUST00000110907 3718 ntAPPRIS ALT1 TSL 1 (best) BASIC9□□□□□ -0.97
Nup88Q8CEC0 Rnase4-202ENSMUST00000169895 1460 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
Nup88Q8CEC0 Folh1-202ENSMUST00000107271 2516 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
Nup88Q8CEC0 Gm37968-201ENSMUST00000195131 3201 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 Gm9866-203ENSMUST00000182592 8487 ntTSL 1 (best) BASIC9□□□□□ -0.97
Nup88Q8CEC0 Gm43747-201ENSMUST00000201412 1330 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 Slc8a1-203ENSMUST00000163680 2913 ntAPPRIS ALT1 TSL 5 BASIC9□□□□□ -0.97
Nup88Q8CEC0 Slc8a1-201ENSMUST00000086538 2913 ntAPPRIS P2 TSL 5 BASIC9□□□□□ -0.97
Nup88Q8CEC0 Gm19028-201ENSMUST00000189614 1873 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 Rttn-201ENSMUST00000023828 7268 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Nup88Q8CEC0 CT010514.1-201ENSMUST00000214088 2969 ntBASIC9□□□□□ -0.97
Nup88Q8CEC0 Dcaf1-201ENSMUST00000055009 4967 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
Nup88Q8CEC0 Slc6a19-201ENSMUST00000022048 3936 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Nrcam-201ENSMUST00000020939 4469 ntAPPRIS P4 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Fam13a-201ENSMUST00000089860 5786 ntAPPRIS P2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 1700012E03Rik-201ENSMUST00000186237 1377 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Liph-201ENSMUST00000060673 3793 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Asap1-215ENSMUST00000177035 3228 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Olfr45-202ENSMUST00000214637 6157 ntAPPRIS P1 TSL 3 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Mpzl3-203ENSMUST00000114664 3424 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm45512-201ENSMUST00000210432 1553 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm13769-202ENSMUST00000214797 2340 ntAPPRIS P1 TSL 3 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Zc3h11a-201ENSMUST00000027736 4395 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm28906-201ENSMUST00000191371 1779 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Cd44-208ENSMUST00000111198 1981 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Farsb-201ENSMUST00000068333 1951 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Tnik-203ENSMUST00000159680 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm29113-201ENSMUST00000185991 3432 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm24284-201ENSMUST00000104240 142 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm25725-201ENSMUST00000104528 130 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Paqr5-202ENSMUST00000113990 1073 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm12870-201ENSMUST00000121383 1016 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Mgst1-207ENSMUST00000140932 742 ntTSL 3 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 A630023P12Rik-202ENSMUST00000141420 495 ntTSL 2 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm22847-201ENSMUST00000157707 105 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Hist2h2bb-201ENSMUST00000177113 381 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Trav7n-6-201ENSMUST00000178100 381 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm26910-201ENSMUST00000180450 698 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm28006-201ENSMUST00000183841 122 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Mocs2-212ENSMUST00000184214 551 ntTSL 3 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Mir7005-201ENSMUST00000185089 69 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm28983-201ENSMUST00000186685 614 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm28150-201ENSMUST00000187305 614 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm17867-201ENSMUST00000188981 391 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm28087-201ENSMUST00000189195 767 ntTSL 5 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm28377-201ENSMUST00000189695 720 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm30613-201ENSMUST00000197277 512 ntTSL 3 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm44252-201ENSMUST00000204187 330 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Olfr320-201ENSMUST00000204718 928 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 RMST_1.1-203ENSMUST00000217866 775 ntTSL 3 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 AC126939.4-201ENSMUST00000225360 743 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Defb34-201ENSMUST00000064475 246 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Krtap8-1-201ENSMUST00000072280 579 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Olfr290-201ENSMUST00000073468 948 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 B230118H07Rik-201ENSMUST00000090513 969 ntAPPRIS P2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Smc1b-201ENSMUST00000023068 4047 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 CT010505.3-201ENSMUST00000227835 1651 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Fto-202ENSMUST00000125471 3887 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Adgrb3-201ENSMUST00000041838 5059 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 AC132412.1-201ENSMUST00000204155 2724 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Arhgap12-208ENSMUST00000182213 4162 ntAPPRIS ALT1 TSL 5 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Olfr466-202ENSMUST00000214214 4192 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Nxpe4-201ENSMUST00000093853 3173 ntAPPRIS P2 TSL 5 BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm14226-201ENSMUST00000130870 3243 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm8428-201ENSMUST00000159919 1784 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Zp4-ps-201ENSMUST00000220980 1561 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm6767-201ENSMUST00000118650 1381 ntBASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Fancd2os-201ENSMUST00000035870 1358 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Nup88Q8CEC0 Gm15759-201ENSMUST00000161126 3723 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm18259-201ENSMUST00000220991 2010 ntBASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Irgm1-201ENSMUST00000049519 2259 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Vezt-201ENSMUST00000047711 4479 ntAPPRIS P3 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm44550-201ENSMUST00000207311 2058 ntBASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Nr5a2-201ENSMUST00000027649 4733 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Psg22-202ENSMUST00000108481 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Psg22-203ENSMUST00000208221 1871 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Psg22-201ENSMUST00000051973 1869 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Oas2-201ENSMUST00000053909 3869 ntAPPRIS P3 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Retreg1-205ENSMUST00000227275 3200 ntAPPRIS P1 BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Syn3-201ENSMUST00000120638 2360 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Serpinb1a-201ENSMUST00000076352 1918 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm8844-201ENSMUST00000119460 2614 ntBASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Pum1-203ENSMUST00000097864 4017 ntAPPRIS ALT1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Nppb-201ENSMUST00000103231 781 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 n-R5s9-201ENSMUST00000104432 117 ntBASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Msn-201ENSMUST00000117399 3842 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm12993-201ENSMUST00000119900 479 ntBASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm15763-201ENSMUST00000120136 403 ntBASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm14328-201ENSMUST00000122178 408 ntBASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm14376-201ENSMUST00000145297 297 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Platr14-205ENSMUST00000146553 770 ntTSL 2 BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Ttc9c-204ENSMUST00000153281 1192 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm3513-201ENSMUST00000161319 637 ntTSL 3 BASIC8.98□□□□□ -0.97
Nup88Q8CEC0 Gm15734-201ENSMUST00000163076 1040 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms