Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Lipt1-201ENSMUST00000041621 1485 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Trub1-201ENSMUST00000026072 4300 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Gm37980-201ENSMUST00000194420 1910 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Mical2-201ENSMUST00000037991 3352 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Ifna16-201ENSMUST00000105148 1010 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
Traf1P39428 Gm15586-201ENSMUST00000121218 528 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Gm12632-201ENSMUST00000121223 495 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Gm25437-201ENSMUST00000158282 132 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Gm6921-201ENSMUST00000161478 435 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Gm4781-201ENSMUST00000167995 781 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Gm9381-201ENSMUST00000182285 1012 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Gm40304-201ENSMUST00000202154 268 ntTSL 3 BASIC9.04□□□□□ -0.96
Traf1P39428 Gm18484-201ENSMUST00000204389 991 ntBASIC9.04□□□□□ -0.96
Traf1P39428 0610006L08Rik-202ENSMUST00000206672 803 ntTSL 3 BASIC9.04□□□□□ -0.96
Traf1P39428 Gm30504-203ENSMUST00000209762 1048 ntTSL 5 BASIC9.04□□□□□ -0.96
Traf1P39428 Tmem156-206ENSMUST00000212640 1271 ntTSL 5 BASIC9.04□□□□□ -0.96
Traf1P39428 AC159462.2-201ENSMUST00000217559 463 ntTSL 5 BASIC9.04□□□□□ -0.96
Traf1P39428 AC157571.1-201ENSMUST00000222014 520 ntBASIC9.04□□□□□ -0.96
Traf1P39428 AC154649.2-201ENSMUST00000228189 808 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Rpl27a-ps1-201ENSMUST00000075382 448 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Snora9-201ENSMUST00000082579 133 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Olfr305-204ENSMUST00000216700 3734 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
Traf1P39428 Gm12608-201ENSMUST00000122013 1715 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Haus2-203ENSMUST00000124187 3154 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Fastkd1-202ENSMUST00000102706 2511 ntAPPRIS ALT2 TSL 5 BASIC9.04□□□□□ -0.96
Traf1P39428 Card6-201ENSMUST00000118365 5995 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
Traf1P39428 Olfr374-202ENSMUST00000210435 8718 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
Traf1P39428 Atp6v0a1-202ENSMUST00000092663 3813 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
Traf1P39428 Gm17229-202ENSMUST00000166792 1753 ntBASIC9.04□□□□□ -0.96
Traf1P39428 EPPK1-201ENSMUST00000226781 12325 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
Traf1P39428 Gm37956-201ENSMUST00000195208 2010 ntBASIC9.04□□□□□ -0.96
Traf1P39428 Gm43158-201ENSMUST00000198484 1555 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Gm5182-201ENSMUST00000217708 6092 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Nkrf-201ENSMUST00000057093 3268 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Dnah9-201ENSMUST00000080665 13798 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Traf1P39428 1700012E03Rik-201ENSMUST00000186237 1377 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Ranbp9-208ENSMUST00000222651 1951 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Gykl1-201ENSMUST00000066193 1990 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
Traf1P39428 Zzz3-202ENSMUST00000106100 7607 ntAPPRIS P3 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Olfr859-203ENSMUST00000217280 9596 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Traf1P39428 Anxa9-201ENSMUST00000015846 1851 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Chid1-207ENSMUST00000153191 4182 ntAPPRIS ALT1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Rpl35a-202ENSMUST00000115075 518 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Mageb8-ps-201ENSMUST00000117228 1033 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Gm13858-201ENSMUST00000118862 671 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Gm12126-201ENSMUST00000147717 619 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Gm23663-201ENSMUST00000158045 80 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Mir8114-201ENSMUST00000183582 111 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Gm37270-201ENSMUST00000194277 330 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Ighv1-17-201ENSMUST00000194435 350 ntBASIC9.03□□□□□ -0.96
Traf1P39428 1700039M15Rik-201ENSMUST00000195377 1120 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Gm19254-201ENSMUST00000204828 294 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Lnp1-201ENSMUST00000210579 671 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Traf1P39428 Gm36435-201ENSMUST00000213341 1178 ntTSL 5 BASIC9.03□□□□□ -0.96
Traf1P39428 Akr1c12-201ENSMUST00000021632 1261 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Mplkip-202ENSMUST00000221480 582 ntTSL 5 BASIC9.03□□□□□ -0.96
Traf1P39428 AC154595.1-201ENSMUST00000225533 1059 ntBASIC9.03□□□□□ -0.96
Traf1P39428 AC129537.1-202ENSMUST00000226619 430 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Gm10197-201ENSMUST00000086887 201 ntAPPRIS P1 BASIC9.03□□□□□ -0.96
Traf1P39428 Gm3883-201ENSMUST00000098119 3229 ntBASIC9.03□□□□□ -0.96
Traf1P39428 Slc22a8-201ENSMUST00000010251 3478 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Rfx3-204ENSMUST00000172907 2621 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Tnfrsf19-202ENSMUST00000111236 3958 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Clec1a-201ENSMUST00000037481 3123 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Nrf1-204ENSMUST00000115199 2296 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Zfp964-201ENSMUST00000169125 1416 ntTSL 3 BASIC9.03□□□□□ -0.96
Traf1P39428 Olfr1555-ps1-202ENSMUST00000219261 2918 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
Traf1P39428 Prkg1-201ENSMUST00000065067 3914 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Gm10822-201ENSMUST00000181596 2320 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Ppp1r9a-204ENSMUST00000168998 2966 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Dnajc6-201ENSMUST00000038207 5258 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
Traf1P39428 Ccdc169-201ENSMUST00000052904 2889 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Traf1P39428 Lipk-201ENSMUST00000054260 2125 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Traf1P39428 A830036E02Rik-202ENSMUST00000128904 2768 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Traf1P39428 Mettl15-201ENSMUST00000081631 1894 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
Traf1P39428 2310015D24Rik-202ENSMUST00000187920 2917 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
Traf1P39428 Gm8107-201ENSMUST00000117477 2009 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Znfx1-202ENSMUST00000067584 4147 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 5330413P13Rik-203ENSMUST00000150466 2173 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm31152-201ENSMUST00000210319 2171 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Ctps2-201ENSMUST00000033727 3353 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Olfr1414-201ENSMUST00000062353 6017 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
Traf1P39428 4921521D15Rik-201ENSMUST00000197578 1927 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm45358-201ENSMUST00000209492 2305 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm45528-201ENSMUST00000209854 3145 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm13163-201ENSMUST00000119875 336 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm11809-201ENSMUST00000120923 950 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm14053-201ENSMUST00000121662 470 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm4835-201ENSMUST00000155839 972 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm17149-201ENSMUST00000164712 375 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm10012-202ENSMUST00000170379 372 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Scnm1-201ENSMUST00000172572 1054 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
Traf1P39428 Gm20625-201ENSMUST00000177065 698 ntTSL 3 BASIC9.02□□□□□ -0.97
Traf1P39428 Gm5698-201ENSMUST00000178317 724 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm27008-202ENSMUST00000182414 604 ntTSL 3 BASIC9.02□□□□□ -0.97
Traf1P39428 Mir8099-2-201ENSMUST00000183568 127 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Mir8099-1-201ENSMUST00000184238 127 ntBASIC9.02□□□□□ -0.97
Traf1P39428 C920008G01Rik-201ENSMUST00000196756 380 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
Traf1P39428 Gm42938-201ENSMUST00000198414 1072 ntBASIC9.02□□□□□ -0.97
Traf1P39428 Gm42760-201ENSMUST00000199814 311 ntBASIC9.02□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms