Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mir6403-201ENSMUST00000185007 129 ntBASIC11.71□□□□□ -0.53
Cux1P53564 Gm43396-201ENSMUST00000197506 706 ntBASIC11.71□□□□□ -0.53
Cux1P53564 Gm25617-202ENSMUST00000198387 132 ntBASIC11.71□□□□□ -0.53
Cux1P53564 Gm36241-201ENSMUST00000201085 493 ntTSL 3 BASIC11.71□□□□□ -0.53
Cux1P53564 Olfr687-202ENSMUST00000218046 1004 ntTSL 5 BASIC11.71□□□□□ -0.53
Cux1P53564 AC133958.1-201ENSMUST00000227085 961 ntBASIC11.71□□□□□ -0.53
Cux1P53564 Itgam-201ENSMUST00000064821 4682 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Cux1P53564 Mir7b-201ENSMUST00000083557 111 ntBASIC11.71□□□□□ -0.53
Cux1P53564 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cux1P53564 Cep57l1-210ENSMUST00000190022 1949 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cux1P53564 Inpp1-201ENSMUST00000027271 5767 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 Atf7-211ENSMUST00000184906 1457 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 Cyp4v3-201ENSMUST00000095328 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 4933424M12Rik-201ENSMUST00000132609 1944 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 Gm3669-201ENSMUST00000126712 1846 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 Gm2165-202ENSMUST00000129963 1846 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 Gm2101-203ENSMUST00000133794 1846 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 Gm2117-203ENSMUST00000147993 1846 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cux1P53564 Gm15628-201ENSMUST00000162051 547 ntTSL 2 BASIC11.7□□□□□ -0.54
Cux1P53564 Gm8046-201ENSMUST00000172151 616 ntBASIC11.7□□□□□ -0.54
Cux1P53564 Gm38102-202ENSMUST00000196428 174 ntTSL 5 BASIC11.7□□□□□ -0.54
Cux1P53564 Gm43560-201ENSMUST00000198100 773 ntBASIC11.7□□□□□ -0.54
Cux1P53564 AC163621.1-201ENSMUST00000220695 379 ntBASIC11.7□□□□□ -0.54
Cux1P53564 AV026068-219ENSMUST00000224148 933 ntBASIC11.7□□□□□ -0.54
Cux1P53564 CT009556.4-201ENSMUST00000227092 200 ntBASIC11.7□□□□□ -0.54
Cux1P53564 Mup14-202ENSMUST00000075206 925 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Gm5446-201ENSMUST00000091762 784 ntBASIC11.7□□□□□ -0.54
Cux1P53564 Cox11-202ENSMUST00000099960 773 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
Cux1P53564 Gm26939-201ENSMUST00000177146 2261 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Liph-202ENSMUST00000074230 3703 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Zfyve26-201ENSMUST00000021547 9391 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 B930018H19Rik-201ENSMUST00000211381 2121 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Arhgef7-202ENSMUST00000074856 4451 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Dzank1-201ENSMUST00000081982 6847 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Tma16-201ENSMUST00000026681 4328 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Chid1-203ENSMUST00000118694 3910 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Celf5-204ENSMUST00000120856 3861 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 AC160637.1-201ENSMUST00000214037 3887 ntBASIC11.7□□□□□ -0.54
Cux1P53564 Olfr742-203ENSMUST00000217437 2244 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Cux1P53564 CT010453.1-201ENSMUST00000226795 2201 ntBASIC11.7□□□□□ -0.54
Cux1P53564 Nbr1-207ENSMUST00000107218 3353 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Cux1P53564 Sox6-206ENSMUST00000205405 2903 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Cux1P53564 Aplnr-201ENSMUST00000057019 3699 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Cux1P53564 3830406C13Rik-201ENSMUST00000112669 2477 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 3830406C13Rik-202ENSMUST00000163392 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Mstn-202ENSMUST00000191197 2461 ntTSL 5 BASIC11.7□□□□□ -0.54
Cux1P53564 Gm13270-201ENSMUST00000149137 1686 ntTSL 2 BASIC11.7□□□□□ -0.54
Cux1P53564 Gm22781-201ENSMUST00000104083 137 ntBASIC11.7□□□□□ -0.54
Cux1P53564 Il21-202ENSMUST00000161015 529 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Oas1h-202ENSMUST00000171820 931 ntTSL 5 BASIC11.7□□□□□ -0.54
Cux1P53564 1700123O21Rik-201ENSMUST00000190515 677 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Gm39075-201ENSMUST00000206031 512 ntTSL 5 BASIC11.7□□□□□ -0.54
Cux1P53564 Gm30853-201ENSMUST00000218367 810 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cux1P53564 Gm5791-201ENSMUST00000220840 489 ntBASIC11.7□□□□□ -0.54
Cux1P53564 CT030238.3-201ENSMUST00000227352 875 ntBASIC11.7□□□□□ -0.54
Cux1P53564 Mrpl48-201ENSMUST00000064334 1865 ntBASIC11.69□□□□□ -0.54
Cux1P53564 Gm43336-201ENSMUST00000200487 4504 ntBASIC11.69□□□□□ -0.54
Cux1P53564 Cacna1c-214ENSMUST00000188106 6462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Cxcr4-201ENSMUST00000052172 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 4930524O08Rik-201ENSMUST00000183387 1451 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Cyp2c29-201ENSMUST00000003137 1783 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 AC164437.4-204ENSMUST00000227169 4024 ntBASIC11.69□□□□□ -0.54
Cux1P53564 Pla2g4d-201ENSMUST00000094665 3688 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Nsd2-201ENSMUST00000058096 4633 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Cux1P53564 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Pld1-201ENSMUST00000067757 4804 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Cntrl-206ENSMUST00000113037 5970 ntTSL 5 BASIC11.69□□□□□ -0.54
Cux1P53564 Cacna1c-204ENSMUST00000112793 6669 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Cacna1c-208ENSMUST00000187317 6663 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Cux1P53564 Dclk1-212ENSMUST00000199585 5196 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Srgap3-203ENSMUST00000113169 8300 ntTSL 5 BASIC11.69□□□□□ -0.54
Cux1P53564 Slu7-201ENSMUST00000020681 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Olfr522-201ENSMUST00000050585 4766 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cux1P53564 Ctc1-201ENSMUST00000021278 4164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Gm39321-203ENSMUST00000217090 1575 ntTSL 5 BASIC11.69□□□□□ -0.54
Cux1P53564 Gm26419-201ENSMUST00000104272 133 ntBASIC11.69□□□□□ -0.54
Cux1P53564 Gm26417-201ENSMUST00000104274 135 ntBASIC11.69□□□□□ -0.54
Cux1P53564 Cnih1-202ENSMUST00000146629 789 ntTSL 5 BASIC11.69□□□□□ -0.54
Cux1P53564 Gm37679-201ENSMUST00000192868 1192 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 AC167364.2-201ENSMUST00000221226 1037 ntTSL 5 BASIC11.69□□□□□ -0.54
Cux1P53564 Gm9267-201ENSMUST00000222831 404 ntBASIC11.69□□□□□ -0.54
Cux1P53564 AC159205.7-201ENSMUST00000225988 692 ntBASIC11.69□□□□□ -0.54
Cux1P53564 AC123533.2-201ENSMUST00000228176 375 ntBASIC11.69□□□□□ -0.54
Cux1P53564 Slc5a4b-201ENSMUST00000120757 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 AI314278-202ENSMUST00000209026 2373 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Vrk1-203ENSMUST00000085026 3711 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 AC168056.4-201ENSMUST00000223835 2567 ntBASIC11.69□□□□□ -0.54
Cux1P53564 Kank4os-201ENSMUST00000133455 2251 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Dido1-206ENSMUST00000103057 4906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cux1P53564 Gm44080-201ENSMUST00000204451 2214 ntBASIC11.69□□□□□ -0.54
Cux1P53564 AC155270.1-201ENSMUST00000221626 4028 ntBASIC11.68□□□□□ -0.54
Cux1P53564 Kmt2a-202ENSMUST00000114689 16470 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Cux1P53564 Dnmbp-203ENSMUST00000212048 4186 ntTSL 5 BASIC11.68□□□□□ -0.54
Cux1P53564 Gm32389-201ENSMUST00000209312 1621 ntTSL 3 BASIC11.68□□□□□ -0.54
Cux1P53564 Rgs4-202ENSMUST00000111357 2575 ntTSL 5 BASIC11.68□□□□□ -0.54
Cux1P53564 Ap3m1-206ENSMUST00000154460 6732 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cux1P53564 St3gal1-201ENSMUST00000092640 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cux1P53564 Gm15448-201ENSMUST00000094911 1557 ntTSL 5 BASIC11.68□□□□□ -0.54
Cux1P53564 Gbp11-202ENSMUST00000171587 1329 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cux1P53564 Bmf-201ENSMUST00000090219 4642 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms