Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Prpf40aQ9R1C7 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Prpf40aQ9R1C7 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.43■□□□□ 0.86
Prpf40aQ9R1C7 Gm10033-202ENSMUST00000211874 928 ntBASIC20.43■□□□□ 0.86
Prpf40aQ9R1C7 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Prpf40aQ9R1C7 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Prpf40aQ9R1C7 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.42■□□□□ 0.86
Prpf40aQ9R1C7 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Prpf40aQ9R1C7 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Prpf40aQ9R1C7 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Prpf40aQ9R1C7 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Prpf40aQ9R1C7 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
Prpf40aQ9R1C7 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
Prpf40aQ9R1C7 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Prpf40aQ9R1C7 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.39■□□□□ 0.85
Prpf40aQ9R1C7 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Prpf40aQ9R1C7 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
Prpf40aQ9R1C7 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Prpf40aQ9R1C7 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Prpf40aQ9R1C7 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Prpf40aQ9R1C7 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Prpf40aQ9R1C7 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 AV356131-201ENSMUST00000206201 750 ntBASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Prpf40aQ9R1C7 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms