Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC22.3■■□□□ 1.16
Scn11aQ9R053 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Scn11aQ9R053 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC22.29■■□□□ 1.16
Scn11aQ9R053 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC22.29■■□□□ 1.16
Scn11aQ9R053 AC153881.2-201ENSMUST00000214877 204 ntBASIC22.29■■□□□ 1.16
Scn11aQ9R053 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Scn11aQ9R053 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Scn11aQ9R053 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Scn11aQ9R053 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Scn11aQ9R053 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Scn11aQ9R053 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Scn11aQ9R053 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Scn11aQ9R053 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC22.28■■□□□ 1.16
Scn11aQ9R053 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Scn11aQ9R053 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Scn11aQ9R053 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Scn11aQ9R053 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Scn11aQ9R053 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC22.27■■□□□ 1.16
Scn11aQ9R053 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC22.27■■□□□ 1.16
Scn11aQ9R053 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
Scn11aQ9R053 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
Scn11aQ9R053 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
Scn11aQ9R053 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Scn11aQ9R053 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Scn11aQ9R053 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Scn11aQ9R053 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC22.26■■□□□ 1.15
Scn11aQ9R053 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Scn11aQ9R053 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
Scn11aQ9R053 Gm20634-201ENSMUST00000090779 2956 ntBASIC22.26■■□□□ 1.15
Scn11aQ9R053 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Scn11aQ9R053 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Scn11aQ9R053 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Scn11aQ9R053 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Scn11aQ9R053 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Scn11aQ9R053 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Scn11aQ9R053 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Scn11aQ9R053 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Scn11aQ9R053 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC22.25■■□□□ 1.15
Scn11aQ9R053 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC22.25■■□□□ 1.15
Scn11aQ9R053 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC22.24■■□□□ 1.15
Scn11aQ9R053 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Scn11aQ9R053 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Scn11aQ9R053 AC153881.1-201ENSMUST00000214448 284 ntBASIC22.24■■□□□ 1.15
Scn11aQ9R053 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC22.24■■□□□ 1.15
Scn11aQ9R053 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Scn11aQ9R053 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Scn11aQ9R053 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Scn11aQ9R053 Gm18666-201ENSMUST00000190039 958 ntBASIC22.23■■□□□ 1.15
Scn11aQ9R053 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Scn11aQ9R053 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Scn11aQ9R053 Zfp783-201ENSMUST00000095946 670 ntBASIC22.23■■□□□ 1.15
Scn11aQ9R053 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Scn11aQ9R053 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Scn11aQ9R053 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Scn11aQ9R053 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Scn11aQ9R053 Nrn1-203ENSMUST00000223611 1443 ntBASIC22.21■■□□□ 1.15
Scn11aQ9R053 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Scn11aQ9R053 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Scn11aQ9R053 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.15
Scn11aQ9R053 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
Scn11aQ9R053 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
Scn11aQ9R053 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC22.2■■□□□ 1.14
Scn11aQ9R053 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms