Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Mir3081-201ENSMUST00000175305 84 ntBASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Spr-ps1-201ENSMUST00000089584 605 ntBASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Upf1Q9EPU0 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
Upf1Q9EPU0 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Gm12085-201ENSMUST00000119263 940 ntBASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Gm17808-201ENSMUST00000200859 894 ntBASIC21.33■■□□□ 1.01
Upf1Q9EPU0 AC166341.7-201ENSMUST00000221698 126 ntBASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Upf1Q9EPU0 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Upf1Q9EPU0 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC21.32■■□□□ 1
Upf1Q9EPU0 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Upf1Q9EPU0 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
Upf1Q9EPU0 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC21.32■■□□□ 1
Upf1Q9EPU0 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.32■■□□□ 1
Upf1Q9EPU0 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.32■■□□□ 1
Upf1Q9EPU0 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Upf1Q9EPU0 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf1Q9EPU0 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Upf1Q9EPU0 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Upf1Q9EPU0 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf1Q9EPU0 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf1Q9EPU0 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC21.31■■□□□ 1
Upf1Q9EPU0 Gm27357-201ENSMUST00000183754 135 ntBASIC21.31■■□□□ 1
Upf1Q9EPU0 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC21.31■■□□□ 1
Upf1Q9EPU0 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC21.31■■□□□ 1
Upf1Q9EPU0 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC21.31■■□□□ 1
Upf1Q9EPU0 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Upf1Q9EPU0 Gm6190-201ENSMUST00000220683 1374 ntBASIC21.31■■□□□ 1
Upf1Q9EPU0 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.31■■□□□ 1
Upf1Q9EPU0 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC21.31■■□□□ 1
Upf1Q9EPU0 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC21.3■■□□□ 1
Upf1Q9EPU0 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC21.3■■□□□ 1
Upf1Q9EPU0 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC21.3■■□□□ 1
Upf1Q9EPU0 Gm5712-201ENSMUST00000199748 1043 ntBASIC21.3■■□□□ 1
Upf1Q9EPU0 Gm34391-201ENSMUST00000203706 907 ntBASIC21.3■■□□□ 1
Upf1Q9EPU0 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC21.3■■□□□ 1
Upf1Q9EPU0 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Upf1Q9EPU0 Gm21559-201ENSMUST00000220638 855 ntBASIC21.3■■□□□ 1
Upf1Q9EPU0 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Upf1Q9EPU0 Gm8587-201ENSMUST00000076538 843 ntBASIC21.3■■□□□ 1
Upf1Q9EPU0 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Upf1Q9EPU0 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Upf1Q9EPU0 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.3■■□□□ 1
Upf1Q9EPU0 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.3■■□□□ 1
Upf1Q9EPU0 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Upf1Q9EPU0 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf1Q9EPU0 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Upf1Q9EPU0 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC21.29■■□□□ 1
Upf1Q9EPU0 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC21.29■■□□□ 1
Upf1Q9EPU0 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC21.29■■□□□ 1
Upf1Q9EPU0 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf1Q9EPU0 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Upf1Q9EPU0 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf1Q9EPU0 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Upf1Q9EPU0 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Upf1Q9EPU0 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Upf1Q9EPU0 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf1Q9EPU0 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf1Q9EPU0 Mir6349-201ENSMUST00000184059 97 ntBASIC21.28■■□□□ 1
Upf1Q9EPU0 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC21.28■■□□□ 1
Upf1Q9EPU0 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf1Q9EPU0 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf1Q9EPU0 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.28■■□□□ 1
Upf1Q9EPU0 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Upf1Q9EPU0 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC21.28■■□□□ 1
Upf1Q9EPU0 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.27■■□□□ 1
Upf1Q9EPU0 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Upf1Q9EPU0 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC21.27■■□□□ 1
Upf1Q9EPU0 Gm16061-201ENSMUST00000122167 857 ntBASIC21.27■■□□□ 1
Upf1Q9EPU0 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Upf1Q9EPU0 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC21.27■■□□□ 1
Upf1Q9EPU0 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms