Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC20.54■□□□□ 0.88
Rpap3Q9D706 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Rpap3Q9D706 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rpap3Q9D706 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.53■□□□□ 0.88
Rpap3Q9D706 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.53■□□□□ 0.88
Rpap3Q9D706 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC20.53■□□□□ 0.88
Rpap3Q9D706 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rpap3Q9D706 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rpap3Q9D706 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rpap3Q9D706 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.53■□□□□ 0.88
Rpap3Q9D706 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.52■□□□□ 0.88
Rpap3Q9D706 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Rpap3Q9D706 Gm21596-201ENSMUST00000178049 1316 ntBASIC20.52■□□□□ 0.87
Rpap3Q9D706 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Gm2399-201ENSMUST00000104944 225 ntBASIC20.51■□□□□ 0.87
Rpap3Q9D706 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.51■□□□□ 0.87
Rpap3Q9D706 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Gm11249-201ENSMUST00000117071 859 ntBASIC20.5■□□□□ 0.87
Rpap3Q9D706 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.5■□□□□ 0.87
Rpap3Q9D706 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Rpap3Q9D706 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rpap3Q9D706 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rpap3Q9D706 Gm5643-201ENSMUST00000117081 966 ntBASIC20.49■□□□□ 0.87
Rpap3Q9D706 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.49■□□□□ 0.87
Rpap3Q9D706 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rpap3Q9D706 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rpap3Q9D706 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Rpap3Q9D706 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rpap3Q9D706 Gm15847-201ENSMUST00000121417 1065 ntBASIC20.48■□□□□ 0.87
Rpap3Q9D706 Gm22325-201ENSMUST00000158904 308 ntBASIC20.48■□□□□ 0.87
Rpap3Q9D706 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rpap3Q9D706 Gm10812-201ENSMUST00000099864 546 ntBASIC20.48■□□□□ 0.87
Rpap3Q9D706 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rpap3Q9D706 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rpap3Q9D706 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rpap3Q9D706 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rpap3Q9D706 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
Rpap3Q9D706 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rpap3Q9D706 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.47■□□□□ 0.87
Rpap3Q9D706 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Rpap3Q9D706 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rpap3Q9D706 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rpap3Q9D706 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms