Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Smc1aQ9CU62 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smc1aQ9CU62 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smc1aQ9CU62 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smc1aQ9CU62 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Smc1aQ9CU62 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Smc1aQ9CU62 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Smc1aQ9CU62 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smc1aQ9CU62 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Smc1aQ9CU62 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Smc1aQ9CU62 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms