Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Sf3b1Q99NB9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Sf3b1Q99NB9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Sf3b1Q99NB9 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Sf3b1Q99NB9 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sf3b1Q99NB9 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Sf3b1Q99NB9 Gm44549-201ENSMUST00000208351 577 ntBASIC19.71■□□□□ 0.75
Sf3b1Q99NB9 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.71■□□□□ 0.75
Sf3b1Q99NB9 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Sf3b1Q99NB9 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Sf3b1Q99NB9 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Sf3b1Q99NB9 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
Sf3b1Q99NB9 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Sf3b1Q99NB9 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Dio3-201ENSMUST00000097228 1449 ntBASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Sf3b1Q99NB9 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sf3b1Q99NB9 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sf3b1Q99NB9 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.67■□□□□ 0.74
Sf3b1Q99NB9 Gm10252-201ENSMUST00000209541 832 ntBASIC19.67■□□□□ 0.74
Sf3b1Q99NB9 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sf3b1Q99NB9 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sf3b1Q99NB9 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Sf3b1Q99NB9 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.66■□□□□ 0.74
Sf3b1Q99NB9 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sf3b1Q99NB9 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms