Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Gm43183-201ENSMUST00000200632 547 ntBASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Zfp783-201ENSMUST00000095946 670 ntBASIC21.33■■□□□ 1.01
Ddx55Q6ZPL9 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Ddx55Q6ZPL9 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Gm8668-201ENSMUST00000120559 1447 ntBASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ddx55Q6ZPL9 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Ddx55Q6ZPL9 Gm8309-201ENSMUST00000206627 1448 ntBASIC21.29■■□□□ 1
Ddx55Q6ZPL9 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx55Q6ZPL9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Ddx55Q6ZPL9 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ddx55Q6ZPL9 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx55Q6ZPL9 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ddx55Q6ZPL9 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Gm16042-201ENSMUST00000204813 1247 ntBASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Arhgef4-208ENSMUST00000211073 171 ntBASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ddx55Q6ZPL9 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Gm10138-203ENSMUST00000206952 366 ntBASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Ddx55Q6ZPL9 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.27■□□□□ 0.99
Ddx55Q6ZPL9 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ddx55Q6ZPL9 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC21.27■□□□□ 0.99
Ddx55Q6ZPL9 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Gm30025-201ENSMUST00000218555 728 ntBASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Gm18025-201ENSMUST00000221733 862 ntBASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ddx55Q6ZPL9 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC21.25■□□□□ 0.99
Ddx55Q6ZPL9 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms