Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smarca1Q6PGB8 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Smarca1Q6PGB8 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Smarca1Q6PGB8 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Smarca1Q6PGB8 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Gm7290-201ENSMUST00000104990 617 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Gm12918-201ENSMUST00000120234 636 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Gm15710-201ENSMUST00000121821 636 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Gm5075-201ENSMUST00000196916 622 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.66■□□□□ 0.9
Smarca1Q6PGB8 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Mir5133-201ENSMUST00000174955 77 ntBASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Smarca1Q6PGB8 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Smarca1Q6PGB8 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Smarca1Q6PGB8 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Smarca1Q6PGB8 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Gm6420-201ENSMUST00000193885 723 ntBASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Smarca1Q6PGB8 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms