Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Gm7860-201ENSMUST00000121190 879 ntBASIC20.4■□□□□ 0.86
CtcfQ61164 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.4■□□□□ 0.86
CtcfQ61164 Gm43017-201ENSMUST00000198296 752 ntBASIC20.4■□□□□ 0.86
CtcfQ61164 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CtcfQ61164 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CtcfQ61164 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CtcfQ61164 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.39■□□□□ 0.86
CtcfQ61164 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CtcfQ61164 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CtcfQ61164 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CtcfQ61164 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CtcfQ61164 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CtcfQ61164 Gm6139-201ENSMUST00000079261 882 ntBASIC20.39■□□□□ 0.85
CtcfQ61164 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CtcfQ61164 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CtcfQ61164 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CtcfQ61164 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CtcfQ61164 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CtcfQ61164 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CtcfQ61164 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CtcfQ61164 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CtcfQ61164 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
CtcfQ61164 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.38■□□□□ 0.85
CtcfQ61164 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CtcfQ61164 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CtcfQ61164 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CtcfQ61164 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.38■□□□□ 0.85
CtcfQ61164 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CtcfQ61164 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CtcfQ61164 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CtcfQ61164 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CtcfQ61164 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
CtcfQ61164 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CtcfQ61164 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CtcfQ61164 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.37■□□□□ 0.85
CtcfQ61164 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CtcfQ61164 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.37■□□□□ 0.85
CtcfQ61164 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CtcfQ61164 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.36■□□□□ 0.85
CtcfQ61164 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
CtcfQ61164 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.36■□□□□ 0.85
CtcfQ61164 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CtcfQ61164 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CtcfQ61164 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CtcfQ61164 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CtcfQ61164 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CtcfQ61164 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
CtcfQ61164 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.34■□□□□ 0.85
CtcfQ61164 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.34■□□□□ 0.85
CtcfQ61164 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.34■□□□□ 0.85
CtcfQ61164 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CtcfQ61164 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.33■□□□□ 0.85
CtcfQ61164 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CtcfQ61164 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CtcfQ61164 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CtcfQ61164 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CtcfQ61164 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CtcfQ61164 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms