Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Gm14859-201ENSMUST00000117752 357 ntBASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Gm7284-201ENSMUST00000131667 944 ntBASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col27a1Q5QNQ9 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.21■□□□□ 0.51
Col27a1Q5QNQ9 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col27a1Q5QNQ9 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Gm18101-201ENSMUST00000215769 548 ntBASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Gm8309-201ENSMUST00000206627 1448 ntBASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC18.19■□□□□ 0.5
Col27a1Q5QNQ9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Mir6349-201ENSMUST00000184059 97 ntBASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Col27a1Q5QNQ9 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col27a1Q5QNQ9 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col27a1Q5QNQ9 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col27a1Q5QNQ9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col27a1Q5QNQ9 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.14■□□□□ 0.5
Col27a1Q5QNQ9 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col27a1Q5QNQ9 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.14■□□□□ 0.5
Col27a1Q5QNQ9 Gm38285-201ENSMUST00000192928 922 ntBASIC18.14■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 97.3 ms