Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col9a1Q05722 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Col9a1Q05722 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Col9a1Q05722 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC18.3■□□□□ 0.52
Col9a1Q05722 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.3■□□□□ 0.52
Col9a1Q05722 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Col9a1Q05722 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.3■□□□□ 0.52
Col9a1Q05722 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.3■□□□□ 0.52
Col9a1Q05722 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col9a1Q05722 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col9a1Q05722 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.29■□□□□ 0.52
Col9a1Q05722 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col9a1Q05722 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col9a1Q05722 Gm11927-201ENSMUST00000118472 759 ntBASIC18.29■□□□□ 0.52
Col9a1Q05722 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Col9a1Q05722 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Col9a1Q05722 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Col9a1Q05722 Gm2213-201ENSMUST00000197485 688 ntBASIC18.29■□□□□ 0.52
Col9a1Q05722 Gm7370-201ENSMUST00000219471 767 ntBASIC18.29■□□□□ 0.52
Col9a1Q05722 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col9a1Q05722 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
Col9a1Q05722 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col9a1Q05722 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.28■□□□□ 0.52
Col9a1Q05722 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Col9a1Q05722 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.28■□□□□ 0.52
Col9a1Q05722 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Col9a1Q05722 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col9a1Q05722 Mir3081-201ENSMUST00000175305 84 ntBASIC18.28■□□□□ 0.52
Col9a1Q05722 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.28■□□□□ 0.52
Col9a1Q05722 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 Gm8587-201ENSMUST00000076538 843 ntBASIC18.28■□□□□ 0.52
Col9a1Q05722 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col9a1Q05722 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
Col9a1Q05722 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col9a1Q05722 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col9a1Q05722 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC18.27■□□□□ 0.52
Col9a1Q05722 Mir8098-201ENSMUST00000184011 137 ntBASIC18.27■□□□□ 0.52
Col9a1Q05722 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col9a1Q05722 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col9a1Q05722 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.27■□□□□ 0.52
Col9a1Q05722 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col9a1Q05722 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col9a1Q05722 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.27■□□□□ 0.51
Col9a1Q05722 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col9a1Q05722 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col9a1Q05722 Flg-201ENSMUST00000050758 1488 ntBASIC18.26■□□□□ 0.51
Col9a1Q05722 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col9a1Q05722 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Col9a1Q05722 Gm2274-201ENSMUST00000184539 609 ntBASIC18.26■□□□□ 0.51
Col9a1Q05722 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC18.26■□□□□ 0.51
Col9a1Q05722 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC18.26■□□□□ 0.51
Col9a1Q05722 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.26■□□□□ 0.51
Col9a1Q05722 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
Col9a1Q05722 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col9a1Q05722 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Col9a1Q05722 AA386476-201ENSMUST00000098781 1665 ntBASIC18.25■□□□□ 0.51
Col9a1Q05722 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.25■□□□□ 0.51
Col9a1Q05722 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col9a1Q05722 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC18.25■□□□□ 0.51
Col9a1Q05722 Gm13884-201ENSMUST00000118103 829 ntBASIC18.25■□□□□ 0.51
Col9a1Q05722 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.25■□□□□ 0.51
Col9a1Q05722 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.25■□□□□ 0.51
Col9a1Q05722 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col9a1Q05722 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC18.25■□□□□ 0.51
Col9a1Q05722 Gm27463-201ENSMUST00000183569 57 ntBASIC18.25■□□□□ 0.51
Col9a1Q05722 Gm29518-201ENSMUST00000190858 372 ntBASIC18.25■□□□□ 0.51
Col9a1Q05722 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.25■□□□□ 0.51
Col9a1Q05722 Gm38285-201ENSMUST00000192928 922 ntBASIC18.25■□□□□ 0.51
Col9a1Q05722 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col9a1Q05722 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col9a1Q05722 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col9a1Q05722 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Col9a1Q05722 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.25■□□□□ 0.51
Col9a1Q05722 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col9a1Q05722 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col9a1Q05722 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms