Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Hmgb1P63158 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 Gm38205-201ENSMUST00000192243 258 ntBASIC20.43■□□□□ 0.86
Hmgb1P63158 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Hmgb1P63158 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.42■□□□□ 0.86
Hmgb1P63158 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.42■□□□□ 0.86
Hmgb1P63158 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Hmgb1P63158 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hmgb1P63158 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.41■□□□□ 0.86
Hmgb1P63158 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.41■□□□□ 0.86
Hmgb1P63158 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Hmgb1P63158 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
Hmgb1P63158 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.4■□□□□ 0.86
Hmgb1P63158 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Hmgb1P63158 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Hmgb1P63158 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.4■□□□□ 0.86
Hmgb1P63158 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Hmgb1P63158 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Hmgb1P63158 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Hmgb1P63158 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Hmgb1P63158 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Hmgb1P63158 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Hmgb1P63158 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Hmgb1P63158 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Hmgb1P63158 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Hmgb1P63158 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Hmgb1P63158 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.38■□□□□ 0.85
Hmgb1P63158 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.38■□□□□ 0.85
Hmgb1P63158 Gm21168-201ENSMUST00000199646 1096 ntBASIC20.38■□□□□ 0.85
Hmgb1P63158 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.38■□□□□ 0.85
Hmgb1P63158 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.38■□□□□ 0.85
Hmgb1P63158 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Hmgb1P63158 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Hmgb1P63158 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Hmgb1P63158 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.37■□□□□ 0.85
Hmgb1P63158 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.37■□□□□ 0.85
Hmgb1P63158 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.37■□□□□ 0.85
Hmgb1P63158 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.37■□□□□ 0.85
Hmgb1P63158 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Hmgb1P63158 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms