Protein–RNA interactions for Protein: P61620

Sec61a1, Protein transport protein Sec61 subunit alpha isoform 1, mousemouse

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sec61a1P61620 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Sec61a1P61620 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Sec61a1P61620 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.35■□□□□ 0.21
Sec61a1P61620 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Sec61a1P61620 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Sec61a1P61620 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Sec61a1P61620 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Sec61a1P61620 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC16.34■□□□□ 0.21
Sec61a1P61620 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
Sec61a1P61620 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Sec61a1P61620 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Sec61a1P61620 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Smad6-203ENSMUST00000179458 273 ntBASIC16.34■□□□□ 0.21
Sec61a1P61620 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Sec61a1P61620 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Sec61a1P61620 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Sec61a1P61620 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC16.33■□□□□ 0.21
Sec61a1P61620 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Sec61a1P61620 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC16.33■□□□□ 0.2
Sec61a1P61620 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC16.33■□□□□ 0.2
Sec61a1P61620 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC16.33■□□□□ 0.2
Sec61a1P61620 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Sec61a1P61620 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC16.33■□□□□ 0.2
Sec61a1P61620 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61a1P61620 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Sec61a1P61620 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61a1P61620 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61a1P61620 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC16.32■□□□□ 0.2
Sec61a1P61620 Gm18284-201ENSMUST00000172604 624 ntBASIC16.32■□□□□ 0.2
Sec61a1P61620 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Sec61a1P61620 Gm43060-201ENSMUST00000200621 289 ntBASIC16.32■□□□□ 0.2
Sec61a1P61620 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC16.32■□□□□ 0.2
Sec61a1P61620 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC16.32■□□□□ 0.2
Sec61a1P61620 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61a1P61620 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61a1P61620 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61a1P61620 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Sec61a1P61620 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Sec61a1P61620 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC16.31■□□□□ 0.2
Sec61a1P61620 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Sec61a1P61620 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC16.31■□□□□ 0.2
Sec61a1P61620 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Sec61a1P61620 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Sec61a1P61620 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
Sec61a1P61620 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Sec61a1P61620 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Sec61a1P61620 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sec61a1P61620 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 67.9 ms