Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Usp4P35123 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Gm26833-201ENSMUST00000180899 440 ntBASIC19.44■□□□□ 0.7
Usp4P35123 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Usp4P35123 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Usp4P35123 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp4P35123 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.43■□□□□ 0.7
Usp4P35123 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Usp4P35123 Gm12251-201ENSMUST00000117893 792 ntBASIC19.43■□□□□ 0.7
Usp4P35123 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.43■□□□□ 0.7
Usp4P35123 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.43■□□□□ 0.7
Usp4P35123 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC19.43■□□□□ 0.7
Usp4P35123 Cdc34b-202ENSMUST00000188741 1252 ntBASIC19.43■□□□□ 0.7
Usp4P35123 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Usp4P35123 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
Usp4P35123 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.43■□□□□ 0.7
Usp4P35123 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Usp4P35123 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Usp4P35123 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Usp4P35123 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp4P35123 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp4P35123 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Usp4P35123 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Usp4P35123 Spcs1-204ENSMUST00000226782 949 ntBASIC19.42■□□□□ 0.7
Usp4P35123 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp4P35123 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp4P35123 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp4P35123 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp4P35123 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp4P35123 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp4P35123 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usp4P35123 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC19.41■□□□□ 0.7
Usp4P35123 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp4P35123 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.41■□□□□ 0.7
Usp4P35123 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp4P35123 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Usp4P35123 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Usp4P35123 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Usp4P35123 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp4P35123 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Usp4P35123 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Usp4P35123 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.4■□□□□ 0.7
Usp4P35123 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp4P35123 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
Usp4P35123 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Usp4P35123 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.39■□□□□ 0.7
Usp4P35123 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.39■□□□□ 0.69
Usp4P35123 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp4P35123 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp4P35123 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.39■□□□□ 0.69
Usp4P35123 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp4P35123 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp4P35123 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
Usp4P35123 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Usp4P35123 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.39■□□□□ 0.69
Usp4P35123 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp4P35123 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Usp4P35123 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Usp4P35123 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Usp4P35123 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Usp4P35123 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Gm43060-201ENSMUST00000200621 289 ntBASIC19.38■□□□□ 0.69
Usp4P35123 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC19.38■□□□□ 0.69
Usp4P35123 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Usp4P35123 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Usp4P35123 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.38■□□□□ 0.69
Usp4P35123 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp4P35123 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp4P35123 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp4P35123 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp4P35123 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp4P35123 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp4P35123 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.37■□□□□ 0.69
Usp4P35123 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms