Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Chd3B1AR17 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.28■□□□□ 0.52
Chd3B1AR17 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Chd3B1AR17 Gm27275-201ENSMUST00000184318 272 ntBASIC18.27■□□□□ 0.52
Chd3B1AR17 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chd3B1AR17 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Chd3B1AR17 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chd3B1AR17 Gm2399-201ENSMUST00000104944 225 ntBASIC18.27■□□□□ 0.51
Chd3B1AR17 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Chd3B1AR17 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Chd3B1AR17 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Chd3B1AR17 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Chd3B1AR17 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.26■□□□□ 0.51
Chd3B1AR17 Gm22325-201ENSMUST00000158904 308 ntBASIC18.26■□□□□ 0.51
Chd3B1AR17 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.26■□□□□ 0.51
Chd3B1AR17 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.26■□□□□ 0.51
Chd3B1AR17 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
Chd3B1AR17 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.26■□□□□ 0.51
Chd3B1AR17 Gm44549-201ENSMUST00000208351 577 ntBASIC18.26■□□□□ 0.51
Chd3B1AR17 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chd3B1AR17 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Chd3B1AR17 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.25■□□□□ 0.51
Chd3B1AR17 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Chd3B1AR17 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
Chd3B1AR17 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Chd3B1AR17 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Chd3B1AR17 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chd3B1AR17 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.24■□□□□ 0.51
Chd3B1AR17 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.24■□□□□ 0.51
Chd3B1AR17 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.24■□□□□ 0.51
Chd3B1AR17 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.24■□□□□ 0.51
Chd3B1AR17 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.24■□□□□ 0.51
Chd3B1AR17 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Chd3B1AR17 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.24■□□□□ 0.51
Chd3B1AR17 Gm2559-201ENSMUST00000201323 363 ntBASIC18.24■□□□□ 0.51
Chd3B1AR17 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Chd3B1AR17 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Chd3B1AR17 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.24■□□□□ 0.51
Chd3B1AR17 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chd3B1AR17 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Chd3B1AR17 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.23■□□□□ 0.51
Chd3B1AR17 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Chd3B1AR17 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chd3B1AR17 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.23■□□□□ 0.51
Chd3B1AR17 Rncr4-201ENSMUST00000194541 2234 ntBASIC18.23■□□□□ 0.51
Chd3B1AR17 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
Chd3B1AR17 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Chd3B1AR17 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.22■□□□□ 0.51
Chd3B1AR17 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18.22■□□□□ 0.51
Chd3B1AR17 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Chd3B1AR17 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Chd3B1AR17 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Chd3B1AR17 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chd3B1AR17 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms