Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col6a4A2AX52 AC152827.1-201ENSMUST00000221143 2189 ntBASIC15.68■□□□□ 0.1
Col6a4A2AX52 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm6728-201ENSMUST00000178117 1065 ntBASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm21362-201ENSMUST00000194272 928 ntBASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Gm27741-201ENSMUST00000185060 237 ntBASIC15.67■□□□□ 0.1
Col6a4A2AX52 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.67■□□□□ 0.1
Col6a4A2AX52 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col6a4A2AX52 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Col6a4A2AX52 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col6a4A2AX52 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Gm16042-201ENSMUST00000204813 1247 ntBASIC15.65■□□□□ 0.1
Col6a4A2AX52 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col6a4A2AX52 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col6a4A2AX52 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC15.63■□□□□ 0.09
Col6a4A2AX52 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC15.63■□□□□ 0.09
Col6a4A2AX52 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC15.62■□□□□ 0.09
Col6a4A2AX52 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Wnt10b-205ENSMUST00000226846 1204 ntBASIC15.62■□□□□ 0.09
Col6a4A2AX52 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col6a4A2AX52 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col6a4A2AX52 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Col6a4A2AX52 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Col6a4A2AX52 Gm30025-201ENSMUST00000218555 728 ntBASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms