Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Gm5522-201ENSMUST00000189483 1242 ntBASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Serp2-204ENSMUST00000228055 705 ntBASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trav11A0A0B4J1J9 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC12.78□□□□□ -0.36
Trav11A0A0B4J1J9 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trav11A0A0B4J1J9 Gm45141-201ENSMUST00000206502 1888 ntBASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Gm22238-201ENSMUST00000175222 88 ntBASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Trav11A0A0B4J1J9 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Trav11A0A0B4J1J9 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Gm42939-201ENSMUST00000197514 2205 ntBASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trav11A0A0B4J1J9 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms