Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Lypd8-202ENSMUST00000108826 1219 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Gm3476-201ENSMUST00000112742 853 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
Usp4P35123 Gm3149-201ENSMUST00000112779 997 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
Usp4P35123 Gm13352-201ENSMUST00000117515 262 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm12601-201ENSMUST00000118994 846 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm15571-201ENSMUST00000119887 637 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm15225-201ENSMUST00000120449 1017 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm11765-201ENSMUST00000121173 1205 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm12265-201ENSMUST00000139025 468 ntTSL 2 BASIC8.3□□□□□ -1.08
Usp4P35123 Gm13872-203ENSMUST00000147082 657 ntTSL 3 BASIC8.3□□□□□ -1.08
Usp4P35123 4930562A09Rik-201ENSMUST00000153818 734 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Gm5277-201ENSMUST00000164923 556 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm8362-202ENSMUST00000170673 997 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
Usp4P35123 Mir683-1-201ENSMUST00000179371 109 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Mir6919-201ENSMUST00000185146 62 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm28548-201ENSMUST00000191599 409 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Gm29068-201ENSMUST00000191607 400 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm40040-201ENSMUST00000196123 504 ntTSL 3 BASIC8.3□□□□□ -1.08
Usp4P35123 Gm42464-201ENSMUST00000196717 417 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm43560-201ENSMUST00000198100 773 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm43647-201ENSMUST00000198142 486 ntTSL 5 BASIC8.3□□□□□ -1.08
Usp4P35123 Gm43934-201ENSMUST00000205095 388 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm8667-201ENSMUST00000211112 449 ntBASIC8.3□□□□□ -1.08
Usp4P35123 AC126805.1-201ENSMUST00000225142 262 ntBASIC8.3□□□□□ -1.08
Usp4P35123 FAM237A-201ENSMUST00000226288 1105 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
Usp4P35123 Tmem253-204ENSMUST00000228408 415 ntAPPRIS ALT2 BASIC8.3□□□□□ -1.08
Usp4P35123 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Siglec1-201ENSMUST00000028794 6387 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Bdh2-201ENSMUST00000029817 1059 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Frem3-201ENSMUST00000039695 6384 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
Usp4P35123 1700028K03Rik-201ENSMUST00000058921 797 ntAPPRIS P3 TSL 2 BASIC8.3□□□□□ -1.08
Usp4P35123 Gm21957-201ENSMUST00000073056 438 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Gm20302-201ENSMUST00000080671 275 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Cst7-201ENSMUST00000089200 986 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Tcl1b3-201ENSMUST00000090990 1045 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Gm16026-201ENSMUST00000094774 580 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Olfr1320-203ENSMUST00000214375 1831 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
Usp4P35123 Gm3203-201ENSMUST00000197670 2389 ntBASIC8.3□□□□□ -1.08
Usp4P35123 Elavl4-207ENSMUST00000106603 3761 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Alkbh8-201ENSMUST00000053407 3603 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Atxn7l1-208ENSMUST00000136644 3155 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Zrsr1-201ENSMUST00000049506 3282 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
Usp4P35123 Rufy3-201ENSMUST00000031229 4049 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Akap2-205ENSMUST00000102903 6650 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Emsy-201ENSMUST00000038359 3564 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
Usp4P35123 Olfr766-ps1-201ENSMUST00000204515 2909 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
Usp4P35123 Dis3l-202ENSMUST00000113890 3224 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Gm8005-201ENSMUST00000167326 1401 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
Usp4P35123 1810018F18Rik-202ENSMUST00000189546 1447 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Fbxo16-204ENSMUST00000226005 3700 ntAPPRIS ALT2 BASIC8.29□□□□□ -1.08
Usp4P35123 Cyp2c39-201ENSMUST00000025968 1817 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Masp2-201ENSMUST00000052060 3058 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Liph-201ENSMUST00000060673 3793 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Gm37199-201ENSMUST00000193881 4065 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Lemd1-205ENSMUST00000188169 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Ptpn13-201ENSMUST00000048957 7915 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
Usp4P35123 Gm15759-201ENSMUST00000161126 3723 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Tmem91-202ENSMUST00000108404 485 ntTSL 5 BASIC8.29□□□□□ -1.08
Usp4P35123 Cd59b-203ENSMUST00000111131 555 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 4930513N10Rik-202ENSMUST00000132616 490 ntTSL 3 BASIC8.29□□□□□ -1.08
Usp4P35123 Fam229b-206ENSMUST00000136546 592 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
Usp4P35123 Gm26736-201ENSMUST00000180425 1236 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Gm26980-201ENSMUST00000183321 395 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Mir7011-201ENSMUST00000183768 73 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Gm29145-201ENSMUST00000189914 456 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Gm42429-201ENSMUST00000198579 558 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Gm45625-201ENSMUST00000209412 650 ntTSL 5 BASIC8.29□□□□□ -1.08
Usp4P35123 Vmn1r85-202ENSMUST00000209822 1251 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
Usp4P35123 CT030709.1-201ENSMUST00000214443 443 ntTSL 5 BASIC8.29□□□□□ -1.08
Usp4P35123 AV026068-225ENSMUST00000225042 490 ntBASIC8.29□□□□□ -1.08
Usp4P35123 AC110236.1-201ENSMUST00000227807 527 ntBASIC8.29□□□□□ -1.08
Usp4P35123 9230110F15Rik-201ENSMUST00000054175 1135 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Cenpx-202ENSMUST00000055424 606 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Zfp982-201ENSMUST00000063704 1244 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
Usp4P35123 Gm15575-201ENSMUST00000119414 1581 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Olfr628-201ENSMUST00000098193 1553 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
Usp4P35123 Slc16a4-202ENSMUST00000106723 1781 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Olfr551-202ENSMUST00000213540 5440 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
Usp4P35123 9930111J21Rik1-202ENSMUST00000097494 3863 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
Usp4P35123 Trpm6-201ENSMUST00000040489 6508 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Gm3669-201ENSMUST00000126712 1846 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Gm2165-202ENSMUST00000129963 1846 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Gm2101-203ENSMUST00000133794 1846 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Gm2117-203ENSMUST00000147993 1846 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Mmp3-201ENSMUST00000034497 1801 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Usp4P35123 Gm43430-201ENSMUST00000196513 3897 ntBASIC8.29□□□□□ -1.08
Usp4P35123 Zfp790-201ENSMUST00000032796 3376 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Usp4P35123 Armc8-203ENSMUST00000186049 2761 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Usp4P35123 Sulf1-201ENSMUST00000088585 4630 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Usp4P35123 Kcna2-203ENSMUST00000197470 4370 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
Usp4P35123 Olfr860-201ENSMUST00000086482 1686 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
Usp4P35123 Musk-208ENSMUST00000179951 3376 ntTSL 5 BASIC8.28□□□□□ -1.08
Usp4P35123 Depdc5-205ENSMUST00000120902 5195 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
Usp4P35123 C130093G08Rik-201ENSMUST00000202489 2226 ntBASIC8.28□□□□□ -1.08
Usp4P35123 Gm25594-201ENSMUST00000102274 82 ntBASIC8.28□□□□□ -1.08
Usp4P35123 Blvrb-203ENSMUST00000108358 951 ntTSL 3 BASIC8.28□□□□□ -1.08
Usp4P35123 Tmsb15b1-201ENSMUST00000113071 439 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
Usp4P35123 Gm12959-201ENSMUST00000119396 403 ntBASIC8.28□□□□□ -1.08
Usp4P35123 Gm7113-201ENSMUST00000120477 958 ntBASIC8.28□□□□□ -1.08
Usp4P35123 Dmrtc1a-203ENSMUST00000120808 1061 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms