Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pes1-202ENSMUST00000109985 2923 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Cux1P53564 Pes1-201ENSMUST00000020705 2911 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cux1P53564 Srrm1-201ENSMUST00000030613 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cux1P53564 Gm11298-201ENSMUST00000120503 1799 ntBASIC11.84□□□□□ -0.51
Cux1P53564 A330049N07Rik-203ENSMUST00000220010 1989 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cux1P53564 Phf8-201ENSMUST00000046950 5728 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Cux1P53564 Fer1l5-202ENSMUST00000179162 6315 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Cux1P53564 Trip12-207ENSMUST00000186648 6442 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Cux1P53564 Cd44-206ENSMUST00000111192 1305 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Cux1P53564 Tex28-202ENSMUST00000114328 1421 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.51
Cux1P53564 6820431F20Rik-202ENSMUST00000153748 4659 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
Cux1P53564 Ttc41-203ENSMUST00000217747 1949 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Supt7l-204ENSMUST00000201769 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Prkd3-202ENSMUST00000118768 2847 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Dspp-201ENSMUST00000112771 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Pcdh15-241ENSMUST00000195531 5241 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Cux1P53564 Mical2-201ENSMUST00000037991 3352 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Btn2a2-203ENSMUST00000110433 2370 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Htr2c-201ENSMUST00000036303 4747 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Serpina1a-201ENSMUST00000072876 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 2310057M21Rik-201ENSMUST00000059438 6773 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Ighv14-1-201ENSMUST00000103463 351 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Cux1P53564 Gm11320-201ENSMUST00000119434 463 ntBASIC11.83□□□□□ -0.52
Cux1P53564 Tm6sf1-202ENSMUST00000119543 1066 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Gm27008-202ENSMUST00000182414 604 ntTSL 3 BASIC11.83□□□□□ -0.52
Cux1P53564 Gm8182-201ENSMUST00000197863 769 ntBASIC11.83□□□□□ -0.52
Cux1P53564 Gm45509-201ENSMUST00000209624 1229 ntBASIC11.83□□□□□ -0.52
Cux1P53564 CT030182.4-201ENSMUST00000223647 645 ntBASIC11.83□□□□□ -0.52
Cux1P53564 Olfr1448-201ENSMUST00000054737 945 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Cux1P53564 Gm6887-201ENSMUST00000080945 482 ntBASIC11.83□□□□□ -0.52
Cux1P53564 Gm22504-201ENSMUST00000082963 139 ntBASIC11.83□□□□□ -0.52
Cux1P53564 Naa11-201ENSMUST00000060265 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Eya3-201ENSMUST00000020197 4976 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Cux1P53564 Pik3cg-207ENSMUST00000220366 4660 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Tmem33-201ENSMUST00000037918 6247 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Ndrg3-201ENSMUST00000069600 2612 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Fndc1-202ENSMUST00000097425 5845 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cux1P53564 Setd1b-201ENSMUST00000056053 7362 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
Cux1P53564 Syne1-201ENSMUST00000041639 6990 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Cux1P53564 Gm15990-201ENSMUST00000132223 3321 ntTSL 5 BASIC11.83□□□□□ -0.52
Cux1P53564 Gm32742-201ENSMUST00000210433 8516 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cux1P53564 Gm40778-201ENSMUST00000217825 1344 ntBASIC11.83□□□□□ -0.52
Cux1P53564 Ccdc186-202ENSMUST00000118592 6445 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Cux1P53564 Gm37447-201ENSMUST00000195625 2928 ntBASIC11.83□□□□□ -0.52
Cux1P53564 Vmn2r55-202ENSMUST00000172743 2346 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cux1P53564 Gm37150-201ENSMUST00000193900 2754 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Tnfrsf19-202ENSMUST00000111236 3958 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 D7Bwg0826e-201ENSMUST00000208484 3795 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Nucb1-210ENSMUST00000211765 4853 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Mon2-203ENSMUST00000170935 5302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Trav6-2-201ENSMUST00000103573 338 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Cux1P53564 Trdv4-201ENSMUST00000103679 444 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cux1P53564 Gm26480-201ENSMUST00000122619 297 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Gm24011-201ENSMUST00000157732 268 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Csn3-201ENSMUST00000001667 991 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Trav6d-5-201ENSMUST00000180687 338 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cux1P53564 I830127L07Rik-201ENSMUST00000187250 730 ntTSL 5 BASIC11.82□□□□□ -0.52
Cux1P53564 1810041H14Rik-203ENSMUST00000187773 416 ntTSL 5 BASIC11.82□□□□□ -0.52
Cux1P53564 1700027F09Rik-201ENSMUST00000189767 767 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Gm37017-201ENSMUST00000195266 747 ntBASIC11.82□□□□□ -0.52
Cux1P53564 1700113A16Rik-202ENSMUST00000197172 776 ntTSL 2 BASIC11.82□□□□□ -0.52
Cux1P53564 Gm43192-201ENSMUST00000198002 637 ntTSL 3 BASIC11.82□□□□□ -0.52
Cux1P53564 5033403H07Rik-202ENSMUST00000198248 756 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Igkv4-77-201ENSMUST00000199410 352 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Gm3549-201ENSMUST00000203873 794 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Gm6581-201ENSMUST00000214545 260 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Sbpl-201ENSMUST00000024939 870 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Plcg2-201ENSMUST00000081232 4298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Cul2-201ENSMUST00000025073 3727 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 4930546K05Rik-202ENSMUST00000216586 3539 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Arpp21-203ENSMUST00000111872 3316 ntTSL 5 BASIC11.82□□□□□ -0.52
Cux1P53564 Arpp21-229ENSMUST00000164754 3310 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Gm16433-201ENSMUST00000062429 1984 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Gm43839-201ENSMUST00000196183 2325 ntBASIC11.82□□□□□ -0.52
Cux1P53564 Tank-202ENSMUST00000112494 2698 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Hnf4g-201ENSMUST00000108393 2224 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Cts7-203ENSMUST00000224986 1349 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Cux1P53564 Tmem175-202ENSMUST00000078323 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Tln2-207ENSMUST00000215784 8330 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Cux1P53564 Olfr433-202ENSMUST00000214690 2968 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Cux1P53564 Efna5-201ENSMUST00000076840 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Bcl2l11-202ENSMUST00000089634 2301 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cux1P53564 Cabyr-207ENSMUST00000191078 1642 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cux1P53564 Emsy-201ENSMUST00000038359 3564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cux1P53564 Gm22671-201ENSMUST00000104420 134 ntBASIC11.81□□□□□ -0.52
Cux1P53564 Gm13030-201ENSMUST00000105805 655 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
Cux1P53564 Gm11338-201ENSMUST00000120086 1160 ntBASIC11.81□□□□□ -0.52
Cux1P53564 Gm13622-201ENSMUST00000120658 433 ntBASIC11.81□□□□□ -0.52
Cux1P53564 6430710C18Rik-202ENSMUST00000125746 509 ntTSL 5 BASIC11.81□□□□□ -0.52
Cux1P53564 4930551L18Rik-201ENSMUST00000156086 700 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cux1P53564 Mir1983-201ENSMUST00000157523 132 ntBASIC11.81□□□□□ -0.52
Cux1P53564 9130230L23Rik-201ENSMUST00000165250 492 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Cux1P53564 Rsl24d1-204ENSMUST00000169399 841 ntTSL 3 BASIC11.81□□□□□ -0.52
Cux1P53564 Gm24157-201ENSMUST00000175265 111 ntBASIC11.81□□□□□ -0.52
Cux1P53564 Spink8-202ENSMUST00000198988 768 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cux1P53564 Gm4247-201ENSMUST00000211441 1042 ntBASIC11.81□□□□□ -0.52
Cux1P53564 AC134859.1-201ENSMUST00000214085 721 ntTSL 3 BASIC11.81□□□□□ -0.52
Cux1P53564 Gm17611-202ENSMUST00000220613 814 ntBASIC11.81□□□□□ -0.52
Cux1P53564 AV026068-229ENSMUST00000225516 595 ntBASIC11.81□□□□□ -0.52
Cux1P53564 Tnfrsf22-202ENSMUST00000084396 564 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms