Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm28528-201ENSMUST00000188560 857 ntTSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm37369-201ENSMUST00000194179 615 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 A930028O11Rik-201ENSMUST00000197219 1108 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 Frk-201ENSMUST00000019913 4696 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm43040-201ENSMUST00000202399 558 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 Ceacam-ps1-201ENSMUST00000205380 794 ntTSL 2 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm44508-201ENSMUST00000206943 1157 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 Kcne3-207ENSMUST00000208260 929 ntAPPRIS P1 TSL 3 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm19572-201ENSMUST00000214326 338 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 AC162176.1-201ENSMUST00000216490 618 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 AC120394.1-201ENSMUST00000217153 351 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm7392-201ENSMUST00000217815 345 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 AC160030.1-201ENSMUST00000218916 506 ntTSL 2 BASIC7.08□□□□□ -1.28
Col8a1Q00780 AC134537.3-201ENSMUST00000220154 503 ntTSL 3 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm34278-201ENSMUST00000220534 622 ntTSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 AC124510.2-201ENSMUST00000221958 683 ntBASIC7.08□□□□□ -1.28
Col8a1Q00780 Il1f6-201ENSMUST00000028361 883 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Slc7a13-201ENSMUST00000035890 2141 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Olfr492-201ENSMUST00000079865 945 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Steap4-201ENSMUST00000115421 3155 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm35572-201ENSMUST00000212427 2310 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm28360-201ENSMUST00000187455 1491 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Erc1-201ENSMUST00000032279 8356 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Pcdhb8-201ENSMUST00000051163 3334 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Srbd1-201ENSMUST00000095187 3530 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Perm1-201ENSMUST00000105572 3901 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 BC106179-201ENSMUST00000055369 4128 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Ccdc171-201ENSMUST00000053414 4525 ntAPPRIS P2 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Vmn1r86-202ENSMUST00000226604 6378 ntAPPRIS P2 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Olfr802-202ENSMUST00000203785 5535 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Uroc1-202ENSMUST00000164761 3462 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Pilrb1-206ENSMUST00000199387 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Map3k20-204ENSMUST00000135469 6663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Trak2-205ENSMUST00000174120 2636 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Creb5-202ENSMUST00000203487 2648 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Slc18b1-201ENSMUST00000119597 2837 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm16551-203ENSMUST00000160979 3162 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Gm5862-201ENSMUST00000072286 1972 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
Col8a1Q00780 Tex9-201ENSMUST00000085358 3904 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
Col8a1Q00780 Musk-205ENSMUST00000102893 3323 ntTSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Ctnna3-203ENSMUST00000105441 2907 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 C87436-202ENSMUST00000113698 2922 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Csmd2-205ENSMUST00000184063 13555 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Golm1-202ENSMUST00000095739 3689 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm28187-201ENSMUST00000186885 2134 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 AC159635.1-201ENSMUST00000220905 2102 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Ppil4-201ENSMUST00000015901 3471 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Zfp82-207ENSMUST00000183190 1906 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Bdnf-206ENSMUST00000111046 3819 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Tspan9-203ENSMUST00000112173 3819 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Prss35-202ENSMUST00000179574 3211 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 2700099C18Rik-204ENSMUST00000183133 1333 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Trub1-201ENSMUST00000026072 4300 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Pum1-205ENSMUST00000105992 5058 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Ash1l-202ENSMUST00000186583 11644 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gbp6-201ENSMUST00000196520 2604 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Olfr1509-202ENSMUST00000205900 2444 ntAPPRIS P1 TSL 3 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Rnf38-204ENSMUST00000107836 1694 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Tespa1-201ENSMUST00000042586 1663 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Oprl1-202ENSMUST00000108763 2971 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Hk1-203ENSMUST00000116238 3851 ntAPPRIS P4 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm28445-201ENSMUST00000187686 1498 ntTSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Muc6-203ENSMUST00000190907 8757 ntAPPRIS P5 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm37978-201ENSMUST00000194736 2915 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm24257-201ENSMUST00000104472 131 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gstm7-203ENSMUST00000106688 783 ntTSL 2 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm15028-201ENSMUST00000120295 370 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm15351-203ENSMUST00000153095 406 ntTSL 3 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm22948-201ENSMUST00000158561 243 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 AI480526-201ENSMUST00000159072 957 ntTSL 2 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Ggact-204ENSMUST00000161322 524 ntTSL 2 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Slc29a1-208ENSMUST00000164769 1226 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm17205-201ENSMUST00000168370 1207 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm5861-201ENSMUST00000168407 1016 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm8922-201ENSMUST00000170057 1167 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Lgals1-ps2-201ENSMUST00000170221 519 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Smarca2-210ENSMUST00000176475 983 ntTSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm8890-202ENSMUST00000177727 465 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm8926-202ENSMUST00000178158 465 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm8879-202ENSMUST00000178863 465 ntTSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm8922-202ENSMUST00000178989 465 ntTSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Speer1-202ENSMUST00000179482 465 ntTSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm8897-202ENSMUST00000179679 465 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm20917-201ENSMUST00000179922 990 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm26942-201ENSMUST00000182854 797 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Asb4-202ENSMUST00000183358 1143 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Trav6d-4-202ENSMUST00000183820 338 ntAPPRIS ALT2 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm29588-201ENSMUST00000185738 298 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Ccl20-203ENSMUST00000186832 772 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 1810022K09Rik-204ENSMUST00000186870 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm20917-202ENSMUST00000188706 1224 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm29044-202ENSMUST00000188980 300 ntTSL 5 BASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm20915-201ENSMUST00000191575 663 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Ighv8-1-201ENSMUST00000194897 291 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm34144-201ENSMUST00000197039 259 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm5050-201ENSMUST00000197164 775 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm44147-201ENSMUST00000204658 94 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm19007-201ENSMUST00000217746 874 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Gm18503-201ENSMUST00000220340 728 ntBASIC7.07□□□□□ -1.28
Col8a1Q00780 Serpinb6d-202ENSMUST00000221681 1256 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
Retrieved 100 of 76,532 protein–RNA pairs in 70.3 ms