Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Kpna2-ps-201ENSMUST00000120025 1569 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Zfp979-202ENSMUST00000105720 2594 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
Usp4P35123 Itgb6-203ENSMUST00000112517 3537 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Ceacam1-202ENSMUST00000098668 1478 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Musk-203ENSMUST00000098057 3422 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Trappc13-201ENSMUST00000022224 2342 ntAPPRIS P4 TSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Mtbp-205ENSMUST00000170046 3197 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Gm16487-201ENSMUST00000105048 4037 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm4961-201ENSMUST00000197982 2249 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Pclaf-201ENSMUST00000045802 2188 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Zfp52-201ENSMUST00000079242 2175 ntAPPRIS P1 TSL 3 BASIC8.4□□□□□ -1.06
Usp4P35123 Ighv1-82-201ENSMUST00000103549 294 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Usp4P35123 Gm22927-201ENSMUST00000104268 131 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Ppih-204ENSMUST00000106319 622 ntTSL 3 BASIC8.4□□□□□ -1.06
Usp4P35123 Pinlyp-201ENSMUST00000011776 843 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Gm12445-201ENSMUST00000117947 885 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm14938-201ENSMUST00000119482 943 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm14746-201ENSMUST00000120309 741 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm11585-201ENSMUST00000120901 569 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm13360-201ENSMUST00000121607 799 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm15873-201ENSMUST00000123390 761 ntTSL 3 BASIC8.4□□□□□ -1.06
Usp4P35123 Snhg12-203ENSMUST00000128131 614 ntTSL 2 BASIC8.4□□□□□ -1.06
Usp4P35123 Cul1-203ENSMUST00000143941 530 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Gm16541-201ENSMUST00000160992 614 ntTSL 3 BASIC8.4□□□□□ -1.06
Usp4P35123 Scnm1-201ENSMUST00000172572 1054 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Gm23617-201ENSMUST00000175410 95 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm24307-201ENSMUST00000178512 101 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm19402-201ENSMUST00000180297 801 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Usp4P35123 Gm27150-201ENSMUST00000183441 1038 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm27228-201ENSMUST00000184500 1038 ntBASIC8.4□□□□□ -1.06
Usp4P35123 1700030O20Rik-201ENSMUST00000185546 594 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Scgb1b25-ps-201ENSMUST00000186419 415 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Gm7631-201ENSMUST00000196935 1100 ntBASIC8.4□□□□□ -1.06
Usp4P35123 1700041I07Rik-201ENSMUST00000197536 435 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Gm42889-201ENSMUST00000199480 660 ntTSL 3 BASIC8.4□□□□□ -1.06
Usp4P35123 Spa17-201ENSMUST00000002013 696 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Rps3-205ENSMUST00000208532 489 ntTSL 5 BASIC8.4□□□□□ -1.06
Usp4P35123 5830408C22Rik-203ENSMUST00000210596 326 ntTSL 3 BASIC8.4□□□□□ -1.06
Usp4P35123 AC132433.1-201ENSMUST00000221553 1101 ntBASIC8.4□□□□□ -1.06
Usp4P35123 AC122533.2-201ENSMUST00000223772 545 ntBASIC8.4□□□□□ -1.06
Usp4P35123 AC124715.1-201ENSMUST00000228480 754 ntBASIC8.4□□□□□ -1.06
Usp4P35123 Olfr1509-201ENSMUST00000045066 1010 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
Usp4P35123 Tbc1d5-201ENSMUST00000024717 5435 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Gm11639-201ENSMUST00000148007 3613 ntTSL 5 BASIC8.4□□□□□ -1.06
Usp4P35123 Ctnnd1-208ENSMUST00000111677 5789 ntTSL 5 BASIC8.4□□□□□ -1.06
Usp4P35123 Nucb2-203ENSMUST00000183175 1913 ntAPPRIS ALT1 TSL 1 (best) BASIC8.4□□□□□ -1.06
Usp4P35123 Cntn2-201ENSMUST00000086521 7177 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
Usp4P35123 Gm28906-201ENSMUST00000191371 1779 ntBASIC8.4□□□□□ -1.07
Usp4P35123 AC121286.2-201ENSMUST00000218069 2470 ntBASIC8.4□□□□□ -1.07
Usp4P35123 Gm37457-201ENSMUST00000193639 2433 ntBASIC8.4□□□□□ -1.07
Usp4P35123 Ncoa6-202ENSMUST00000109669 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
Usp4P35123 Bicc1-202ENSMUST00000131445 3005 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
Usp4P35123 Bcas3-204ENSMUST00000108056 2925 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
Usp4P35123 B230118H07Rik-203ENSMUST00000111231 2273 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.07
Usp4P35123 Naip1-201ENSMUST00000022142 5464 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
Usp4P35123 Gm20560-201ENSMUST00000204577 3513 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
Usp4P35123 Atg4a-201ENSMUST00000112971 2202 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Fam129a-205ENSMUST00000148810 6531 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Gm37937-201ENSMUST00000194130 2168 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Tmod2-203ENSMUST00000164100 1528 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 AC161117.1-201ENSMUST00000221366 1529 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Tdrkh-202ENSMUST00000166032 5692 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Gm15283-201ENSMUST00000125308 1451 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Sbno1-216ENSMUST00000199808 10161 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Olfr1219-205ENSMUST00000217421 5849 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Sema6a-201ENSMUST00000019791 6856 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 AC132384.4-201ENSMUST00000220343 1397 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm7978-202ENSMUST00000201129 1897 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 BC061212-201ENSMUST00000094587 1897 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Gm22268-201ENSMUST00000104009 131 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm14692-201ENSMUST00000114672 782 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Gm1140-201ENSMUST00000114675 782 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 n-R5s43-201ENSMUST00000122739 110 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm12925-201ENSMUST00000130791 678 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Gm13546-202ENSMUST00000138444 989 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Pitpnm2os2-202ENSMUST00000162577 744 ntTSL 3 BASIC8.39□□□□□ -1.07
Usp4P35123 Gm17139-201ENSMUST00000163802 571 ntTSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Gm6586-201ENSMUST00000167028 643 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm17046-201ENSMUST00000168078 850 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm8857-201ENSMUST00000170064 1102 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Svs3a-201ENSMUST00000017147 1191 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Gm37825-201ENSMUST00000193141 904 ntTSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Gm42964-201ENSMUST00000202965 382 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm45901-201ENSMUST00000203807 661 ntTSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Gm44823-201ENSMUST00000204775 1107 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm45350-201ENSMUST00000210560 509 ntTSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Gm4739-201ENSMUST00000218296 633 ntBASIC8.39□□□□□ -1.07
Usp4P35123 RMST_1.1-214ENSMUST00000220389 633 ntTSL 2 BASIC8.39□□□□□ -1.07
Usp4P35123 AC131745.3-201ENSMUST00000223582 554 ntBASIC8.39□□□□□ -1.07
Usp4P35123 AC163638.1-201ENSMUST00000224818 392 ntBASIC8.39□□□□□ -1.07
Usp4P35123 AC171241.2-201ENSMUST00000228744 892 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Rpsa-ps2-201ENSMUST00000059546 880 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Gm17229-201ENSMUST00000097355 1138 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Zfp770-201ENSMUST00000050668 4300 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Cysltr2-201ENSMUST00000044664 1760 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Gm2163-201ENSMUST00000179734 2723 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Gm28720-201ENSMUST00000190728 3156 ntBASIC8.39□□□□□ -1.07
Usp4P35123 Myt1-202ENSMUST00000108756 5509 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
Usp4P35123 Svil-210ENSMUST00000140448 7423 ntAPPRIS P3 TSL 5 BASIC8.39□□□□□ -1.07
Usp4P35123 Klrb1c-203ENSMUST00000174404 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms