Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Prpf40aQ9R1C7 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.5■□□□□ 0.87
Prpf40aQ9R1C7 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Gm38205-201ENSMUST00000192243 258 ntBASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Prpf40aQ9R1C7 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Gm42642-201ENSMUST00000200683 355 ntBASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Prpf40aQ9R1C7 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Prpf40aQ9R1C7 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Gm18671-201ENSMUST00000214826 683 ntBASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Prpf40aQ9R1C7 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Prpf40aQ9R1C7 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Gm13146-201ENSMUST00000118508 780 ntBASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Prpf40aQ9R1C7 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms