Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx56Q9D0R4 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx56Q9D0R4 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx56Q9D0R4 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.64■□□□□ 0.74
Ddx56Q9D0R4 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx56Q9D0R4 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx56Q9D0R4 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx56Q9D0R4 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx56Q9D0R4 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Gm5874-201ENSMUST00000096101 508 ntBASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.6■□□□□ 0.73
Ddx56Q9D0R4 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx56Q9D0R4 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ddx56Q9D0R4 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ddx56Q9D0R4 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Ddx56Q9D0R4 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Ddx56Q9D0R4 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
Ddx56Q9D0R4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.58■□□□□ 0.72
Ddx56Q9D0R4 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
Ddx56Q9D0R4 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
Ddx56Q9D0R4 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddx56Q9D0R4 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Ddx56Q9D0R4 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Ddx56Q9D0R4 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Gm42642-201ENSMUST00000200683 355 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms