Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
Usp40Q8BWR4 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC25.77■■□□□ 1.72
Usp40Q8BWR4 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
Usp40Q8BWR4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Usp40Q8BWR4 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
Usp40Q8BWR4 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Usp40Q8BWR4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.72
Usp40Q8BWR4 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Usp40Q8BWR4 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Usp40Q8BWR4 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Usp40Q8BWR4 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Usp40Q8BWR4 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Usp40Q8BWR4 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Usp40Q8BWR4 Gm15847-201ENSMUST00000121417 1065 ntBASIC25.75■■□□□ 1.71
Usp40Q8BWR4 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Usp40Q8BWR4 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Usp40Q8BWR4 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
Usp40Q8BWR4 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
Usp40Q8BWR4 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
Usp40Q8BWR4 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Usp40Q8BWR4 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Usp40Q8BWR4 Gm8309-201ENSMUST00000206627 1448 ntBASIC25.73■■□□□ 1.71
Usp40Q8BWR4 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Usp40Q8BWR4 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Usp40Q8BWR4 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
Usp40Q8BWR4 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Usp40Q8BWR4 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Usp40Q8BWR4 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Gm10698-201ENSMUST00000182663 604 ntBASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Usp40Q8BWR4 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Usp40Q8BWR4 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Usp40Q8BWR4 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Usp40Q8BWR4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.71
Usp40Q8BWR4 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
Usp40Q8BWR4 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Nrn1-203ENSMUST00000223611 1443 ntBASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Usp40Q8BWR4 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Usp40Q8BWR4 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Usp40Q8BWR4 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Usp40Q8BWR4 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Usp40Q8BWR4 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Usp40Q8BWR4 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
Usp40Q8BWR4 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
Usp40Q8BWR4 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Gm18666-201ENSMUST00000190039 958 ntBASIC25.68■■□□□ 1.7
Usp40Q8BWR4 AC163280.1-201ENSMUST00000228194 1100 ntBASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
Usp40Q8BWR4 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Usp40Q8BWR4 Wnt10b-205ENSMUST00000226846 1204 ntBASIC25.67■■□□□ 1.7
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms