Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Gm22240-201ENSMUST00000175225 82 ntBASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Hmgb4Q6P8W9 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb4Q6P8W9 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb4Q6P8W9 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb4Q6P8W9 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Gm20049-201ENSMUST00000219950 730 ntBASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hmgb4Q6P8W9 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hmgb4Q6P8W9 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Gm8520-201ENSMUST00000186517 868 ntBASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hmgb4Q6P8W9 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms