Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.69■□□□□ 0.58
Col12a1Q60847 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col12a1Q60847 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col12a1Q60847 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col12a1Q60847 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Col12a1Q60847 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.69■□□□□ 0.58
Col12a1Q60847 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.68■□□□□ 0.58
Col12a1Q60847 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 AC130713.1-201ENSMUST00000228853 1096 ntBASIC18.68■□□□□ 0.58
Col12a1Q60847 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col12a1Q60847 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Col12a1Q60847 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.68■□□□□ 0.58
Col12a1Q60847 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col12a1Q60847 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.67■□□□□ 0.58
Col12a1Q60847 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.67■□□□□ 0.58
Col12a1Q60847 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col12a1Q60847 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Col12a1Q60847 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col12a1Q60847 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.67■□□□□ 0.58
Col12a1Q60847 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col12a1Q60847 Gm5867-201ENSMUST00000063197 592 ntBASIC18.67■□□□□ 0.58
Col12a1Q60847 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col12a1Q60847 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col12a1Q60847 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Col12a1Q60847 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Col12a1Q60847 Gm14859-201ENSMUST00000117752 357 ntBASIC18.66■□□□□ 0.58
Col12a1Q60847 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Col12a1Q60847 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.66■□□□□ 0.58
Col12a1Q60847 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Gm18959-201ENSMUST00000208954 655 ntBASIC18.66■□□□□ 0.58
Col12a1Q60847 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Col12a1Q60847 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Col12a1Q60847 Gm18032-201ENSMUST00000222541 538 ntBASIC18.65■□□□□ 0.58
Col12a1Q60847 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.65■□□□□ 0.58
Col12a1Q60847 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.65■□□□□ 0.58
Col12a1Q60847 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Col12a1Q60847 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col12a1Q60847 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col12a1Q60847 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col12a1Q60847 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col12a1Q60847 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col12a1Q60847 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Col12a1Q60847 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col12a1Q60847 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
Col12a1Q60847 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 Gm42545-201ENSMUST00000202755 922 ntBASIC18.63■□□□□ 0.57
Col12a1Q60847 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Col12a1Q60847 Timm23-208ENSMUST00000226683 750 ntBASIC18.63■□□□□ 0.57
Col12a1Q60847 Mtag2-201ENSMUST00000058665 714 ntBASIC18.63■□□□□ 0.57
Col12a1Q60847 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Col12a1Q60847 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col12a1Q60847 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.62■□□□□ 0.57
Col12a1Q60847 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
Col12a1Q60847 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC18.62■□□□□ 0.57
Col12a1Q60847 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.62■□□□□ 0.57
Col12a1Q60847 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col12a1Q60847 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.62■□□□□ 0.57
Col12a1Q60847 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col12a1Q60847 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col12a1Q60847 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col12a1Q60847 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col12a1Q60847 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col12a1Q60847 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col12a1Q60847 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col12a1Q60847 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col12a1Q60847 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms