Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col27a1Q5QNQ9 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 AC154471.1-201ENSMUST00000224418 436 ntBASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col27a1Q5QNQ9 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col27a1Q5QNQ9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col27a1Q5QNQ9 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col27a1Q5QNQ9 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col27a1Q5QNQ9 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col27a1Q5QNQ9 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col27a1Q5QNQ9 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Col27a1Q5QNQ9 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.27■□□□□ 0.52
Col27a1Q5QNQ9 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col27a1Q5QNQ9 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Col27a1Q5QNQ9 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col27a1Q5QNQ9 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col27a1Q5QNQ9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 Gm45058-201ENSMUST00000205810 766 ntBASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col27a1Q5QNQ9 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Col27a1Q5QNQ9 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms