Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Usp28Q5I043 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Usp28Q5I043 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.25■□□□□ 0.99
Usp28Q5I043 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
Usp28Q5I043 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Usp28Q5I043 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC21.25■□□□□ 0.99
Usp28Q5I043 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Usp28Q5I043 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.24■□□□□ 0.99
Usp28Q5I043 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Usp28Q5I043 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Usp28Q5I043 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Usp28Q5I043 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Usp28Q5I043 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Usp28Q5I043 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Usp28Q5I043 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Dmtn-207ENSMUST00000228001 2437 ntBASIC21.23■□□□□ 0.99
Usp28Q5I043 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.23■□□□□ 0.99
Usp28Q5I043 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.23■□□□□ 0.99
Usp28Q5I043 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Usp28Q5I043 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Usp28Q5I043 Gm43182-201ENSMUST00000199476 2528 ntBASIC21.22■□□□□ 0.99
Usp28Q5I043 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.22■□□□□ 0.99
Usp28Q5I043 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Usp28Q5I043 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Usp28Q5I043 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC21.21■□□□□ 0.99
Usp28Q5I043 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Usp28Q5I043 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp28Q5I043 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.2■□□□□ 0.98
Usp28Q5I043 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp28Q5I043 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC21.2■□□□□ 0.98
Usp28Q5I043 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp28Q5I043 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Usp28Q5I043 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Usp28Q5I043 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.2■□□□□ 0.98
Usp28Q5I043 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.2■□□□□ 0.98
Usp28Q5I043 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Usp28Q5I043 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp28Q5I043 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Usp28Q5I043 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC21.19■□□□□ 0.98
Usp28Q5I043 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC21.19■□□□□ 0.98
Usp28Q5I043 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.19■□□□□ 0.98
Usp28Q5I043 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Usp28Q5I043 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.19■□□□□ 0.98
Usp28Q5I043 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Usp28Q5I043 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp28Q5I043 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Usp28Q5I043 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms